Evidence map›Paper›PMID 36607453›Full record

ArticleCellular and molecular life sciences : CMLS2023

Brain histone beta-hydroxybutyrylation couples metabolism with gene expression.

Sara Cornuti, Siwei Chen, Leonardo Lupori, Francesco Finamore, Fabrizia Carli, Muntaha Samad, Simona Fenizia, Matteo Caldarelli, Francesca Damiani, Francesco Raimondi and 6 more

Open access · greenAbstract read
In one paragraph

Article in Cellular and molecular life sciences : CMLS, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
6.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 35 citations in OpenAlex.

  1. Review
  2. Review
  3. Intermittent Fasting Enhances Genome Integrity and Cytoprotective Pathways via (BHB) β-Hydroxybutyrate Signaling and Chromatin Remodeling.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2026
    Article
  4. Article
  5. Review
  6. Review
  7. Changes in the brain [NADFrontiers in aging neuroscience · 2026
    Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Review
  16. Article
  17. Rapid modulation of interscapular brown adipose tissue mitochondrial activity by ketosis induced by 1,3-butanediol administration to rats.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2024
    Article
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 2 countries.

Sara Cornuti *Bio@SNS Lab, Scuola Normale Superiore, Pisa, Italy.
Siwei Chen *Institute for Genomics and Bioinformatics, School of Information and Computer Sciences, University of California, Irvine, CA, USA.
Leonardo LuporiBio@SNS Lab, Scuola Normale Superiore, Pisa, Italy.
Francesco FinamoreInstitute of Clinical Physiology, National Research Council, Pisa, Italy.
Fabrizia CarliInstitute of Clinical Physiology, National Research Council, Pisa, Italy.
Muntaha SamadInstitute for Genomics and Bioinformatics, School of Information and Computer Sciences, University of California, Irvine, CA, USA.
Simona FeniziaInstitute of Clinical Physiology, National Research Council, Pisa, Italy.
Matteo CaldarelliDepartment of Translational Research and New Technologies in Medicine and Surgery, University of Pisa, Pisa, Italy.
Francesca DamianiBio@SNS Lab, Scuola Normale Superiore, Pisa, Italy.
Francesco RaimondiBio@SNS Lab, Scuola Normale Superiore, Pisa, Italy.
Raffaele MazziottiInstitute of Neuroscience, National Research Council, Pisa, Italy.
Christophe MagnanInstitute for Genomics and Bioinformatics, School of Information and Computer Sciences, University of California, Irvine, CA, USA.
Silvia RocchiccioliInstitute of Clinical Physiology, National Research Council, Pisa, Italy.
Amalia GastaldelliInstitute of Clinical Physiology, National Research Council, Pisa, Italy.
Pierre BaldiInstitute for Genomics and Bioinformatics, School of Information and Computer Sciences, University of California, Irvine, CA, USA.
Paola TogniniBio@SNS Lab, Scuola Normale Superiore, Pisa, Italy. paola.tognini@unipi.it.ORCID http://orcid.org/0000-0001-7055-4701
Istituto di Fisiologia Clinica · ITScuola Normale Superiore · ITUniversity of California, Irvine · USUniversity of Pisa · ITFondazione Stella Maris · IT

Funding

Bioinformatics Tools for Circadian BiologyR01GM123558 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI Pierre Baldi · 2017 to 2026
$2.4M
Horizon 2020 749697 GaMePLAYMinistero dell'Istruzione, dell'Università e della Ricerca Tuscany Health Ecosystem PNRRNIGMS NIH HHS R01 GM123558NIH HHS GM123558University of Pisa PRA-2020
6 · The paper itself

Abstract

Little is known about the impact of metabolic stimuli on brain tissue at a molecular level. The ketone body beta-hydroxybutyrate (BHB) can be a signaling molecule regulating gene transcription. Thus, we assessed lysine beta-hydroxybutyrylation (K-bhb) levels in proteins extracted from the cerebral cortex of mice undergoing a ketogenic metabolic challenge (48 h fasting). We found that fasting enhanced K-bhb in a variety of proteins including histone H3. ChIP-seq experiments showed that K9 beta-hydroxybutyrylation of H3 (H3K9-bhb) was significantly enriched by fasting on more than 8000 DNA loci. Transcriptomic analysis showed that H3K9-bhb on enhancers and promoters correlated with active gene expression. One of the most enriched functional annotations both at the epigenetic and transcriptional level was "circadian rhythms''. Indeed, we found that the diurnal oscillation of specific transcripts was modulated by fasting at distinct zeitgeber times both in the cortex and suprachiasmatic nucleus. Moreover, specific changes in locomotor activity daily features were observed during re-feeding after 48-h fasting. Thus, our results suggest that fasting remarkably impinges on the cerebral cortex transcriptional and epigenetic landscape, and BHB acts as a powerful epigenetic molecule in the brain through direct and specific histone marks remodeling in neural tissue cells.

Indexed as

HistonesKetone Bodies3-Hydroxybutyric AcidAnimalsBrainGene ExpressionMice3-Hydroxybutyric AcidHistonesKetone BodiesBeta-hydroxybutyrylationCerebral cortexEpigenomeFastingTranscriptome

Identifiers

PMID36607453
PMCPMC11072080
OpenAlexW4313649743

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.