Evidence map›Paper›PMID 36604655›Full record

ArticleMalaria journal2023

Genetic variations in human ATP2B4 gene alter Plasmodium falciparum in vitro growth in RBCs from Gambian adults.

Fatou Joof, Elena Hartmann, Alison Jarvis, Alhassan Colley, James H Cross, Marion Avril, Andrew M Prentice, Carla Cerami

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Malaria journal, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
2.3field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Fatou JoofMedical Research Council Unit The Gambia at London School of Hygiene and Tropical Medicine, Banjul, The Gambia.
Elena HartmannManchester University, Manchester, UK.
Alison JarvisManchester University, Manchester, UK.
Alhassan ColleyMedical Research Council Unit The Gambia at London School of Hygiene and Tropical Medicine, Banjul, The Gambia.
James H CrossMedical Research Council Unit The Gambia at London School of Hygiene and Tropical Medicine, Banjul, The Gambia.
Marion AvrilMalarVx, Inc, Seattle, WA, USA.
Andrew M PrenticeMedical Research Council Unit The Gambia at London School of Hygiene and Tropical Medicine, Banjul, The Gambia.
Carla CeramiMedical Research Council Unit The Gambia at London School of Hygiene and Tropical Medicine, Banjul, The Gambia. ccerami@mrc.gm.
MRC Unit the Gambia · GMUniversity of Manchester · GB

Funding

Medical Research Council MCA760-5QX00Medical Research Council MC_PC_MR/R020183/1Medical Research Council MC_U123292699Medical Research Council MC_UU_00026/3
6 · The paper itself

Abstract

backgroundPolymorphisms in ATP2B4 coding for PMCA4b, the primary regulator of erythrocyte calcium concentration, have been shown by GWAS and cross-sectional studies to protect against severe malaria but the mechanism remains unknown.

methodsUsing a recall-by-genotype design, we investigated the impact of a common haplotype variant in ATP2B4 using in vitro assays that model erythrocyte stage malaria pathogenesis. Ninety-six donors representing homozygote (carriers of the minor allele, C/C), heterozygote (T/C) and wildtype (T/T) carriers of the tagging SNP rs1541252 were selected from a cohort of over 12,000 participants in the Keneba Biobank.

resultsRed blood cells (RBCs) from homozygotes showed reduced PMCA4b protein expression (mean fluorescence intensities (MFI = 2428 ± 124, 3544 ± 159 and 4261 ± 283], for homozygotes, heterozygotes and wildtypes respectively, p < 0.0001) and slower rates of calcium expulsion (calcium t

conclusionThe data support the hypothesis that this ATP2B4 genotype, common in The Gambia and other malaria-endemic areas, protects against severe malaria through the suppression of parasitaemia during an infection. Reduction in parasite density plays a pivotal role in disease outcome by minimizing all aspects of malaria pathogenesis. Follow up studies are needed to further elucidate the mechanism of protection and to determine if this ATP2B4 genotype carries a fitness cost or increases susceptibility to other human disease.

Indexed as

Malaria, FalciparumPlasma Membrane Calcium-Transporting ATPasesAdultCalciumCross-Sectional StudiesErythrocytesGambiaHumansPlasmodium falciparumPolymorphism, Single NucleotideATP2B4 protein, humanCalciumPlasma Membrane Calcium-Transporting ATPases

Identifiers

PMID36604655
PMCPMC9817369
OpenAlexW4313537869

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.