Evidence map›Paper›PMID 36604456›Full record

ArticleScientific reports2023

Genome-wide identification, characterization and gene expression of BES1 transcription factor family in grapevine (Vitis vinifera L.).

Jiajia Li, Lei Wang, Feng Leng, Chao Ma, Caixi Zhang, Shiping Wang

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Genome-Wide Identification, Characterization, and Expression Analysis of theInternational journal of molecular sciences · 2024
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4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Jiajia LiDepartment of Plant Science, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China.
Lei WangDepartment of Plant Science, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China. leiwang2016@sjtu.edu.cn.
Feng LengCollege of Horticulture and Plant Protection, Yangzhou University, Yangzhou, China.
Chao MaDepartment of Plant Science, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China.
Caixi ZhangDepartment of Plant Science, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China.
Shiping WangDepartment of Plant Science, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China. fruit@sjtu.edu.cn.
Shanghai Jiao Tong University · CNYangzhou University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

BES1, as the most important transcription factor responsible for brassinolide (BR) signaling, has been confirmed to play a significant role in regulating plant growth and the improvement of stress resistance. The transcriptional regulatory mechanism of BES1 has been well elucidated in several plants, such as Arabidopsis thaliana (A. thaliana), Triticum aestivum L. (T. aestivum), and Oryza sativa L. (O. sativa). Nevertheless, the genome-wide analysis of the BES1 family in Vitis vinifera L. (V. vinifera). has not been comprehensively carried out. Thus, we have conducted a detailed analysis and identification of the BES1 transcription factors family in V. vinifera; a total of eight VvBES1 genes was predicted, and the phylogenetic relationships, gene structures, and Cis-acting element in their promoters were also analyzed. BES1 genes have been divided into three groups (I, II and III) based on phylogenetic relationship analysis, and most of VvBES1 genes were in group III. Also, we found that VvBES1 genes was located at seven of the total nineteen chromosomes, whereas VvBES1-2 (Vitvi04g01234) and VvBES1-5 (Vitvi18g00924) had a collinearity relationship, and their three copies are well preserved. In addition, the intron-exon model of VvBES1 genes were mostly conserved, and there existed several Cis-acting elements related to stress resistance responsive and phytohormones responsive in BES1s genes promoter. Moreover, the BES1 expressions were different in different V. vinifera organs, and BES1 expressions were different in different V. vinifera varieties under saline-alkali stress and heat stress, the expression of VvBES1 also changed with the prolongation of saline-alkali stress treatment time. The above findings could not only lay a primary foundation for the further validation of VvBES1 function, but could also provide a reference for molecular breeding in V. vinifera.

Indexed as

ArabidopsisArabidopsis ProteinsVitisDNA-Binding ProteinsGene ExpressionGene Expression Regulation, PlantMultigene FamilyPhylogenyPlant ProteinsTranscription FactorsArabidopsis ProteinsBES1 protein, ArabidopsisDNA-Binding ProteinsPlant ProteinsTranscription Factors

Identifiers

PMID36604456
PMCPMC9816167
OpenAlexW4313557883

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.