Evidence map›Paper›PMID 36603533›Full record

ArticleVirology2023

Analysis of HIV-1 envelope cytoplasmic tail effects on viral replication.

Ayna Alfadhli, CeAnn Romanaggi, Robin Lid Barklis, Eric Barklis

Open access · greenAbstract read
In one paragraph

Article in Virology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.3field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Ayna AlfadhliDepartment of Molecular Microbiology and Immunology, Oregon Health and Sciences University, Portland, OR, USA.
CeAnn RomanaggiDepartment of Molecular Microbiology and Immunology, Oregon Health and Sciences University, Portland, OR, USA.
Robin Lid BarklisDepartment of Molecular Microbiology and Immunology, Oregon Health and Sciences University, Portland, OR, USA.
Eric BarklisDepartment of Molecular Microbiology and Immunology, Oregon Health and Sciences University, Portland, OR, USA. Electronic address: barklis@ohsu.edu.
Oregon Health & Science University · US

Funding

HIV-1 Gag Precursor Protein InteractionsR01AI152579 · NIAID · OREGON HEALTH & SCIENCE UNIVERSITY · PI BARKLIS, ERIC W · 2020 to 2024
$2.5M
NIAID NIH HHS R01 AI152579
6 · The paper itself

Abstract

Trimers of the HIV-1 envelope (Env) protein perform receptor binding and virus-cell fusion functions during the virus life cycle. The cytoplasmic tail (CT) of Env forms an unusual baseplate structure, and is palmitoylated, rich in arginines, carries trafficking motifs, binds cholesterol, and interacts with host proteins. To dissect CT activities, we examined a panel of Env variants, including CT truncations, mutations, and an extension. We found that whereas all variants could replicate in permissive cells, viruses with CT truncations or baseplate mutations were defective in restrictive cells. We also identified a determinant in HIV-1 amphotericin sensitivity, and characterized variants that escape amphotericin inhibition via viral protease-mediated CT cleavage. Results additionally showed that full-length, his tagged Env can oligomerize and be co-assembled with CT truncations that delete portions of the baseplate, host protein binding sites, and trafficking signals. Our observations illuminate novel aspects of HIV-1 CT structure, interactions, and functions.

Indexed as

HIV-1Amphotericin BCytoplasmMutationVirus ReplicationAmphotericin BAmphotericinCholesterolCytoplasmic tailEnvelopeHIV-1Replication

Identifiers

PMID36603533
PMCPMC10003682
OpenAlexW4313593078

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.