Evidence map›Paper›PMID 36602010›Full record

ArticleThe Plant journal : for cell and molecular biology2023

Grass xylan structural variation suggests functional specialization and distinctive interaction with cellulose and lignin.

Theodora Tryfona, Matthieu Bourdon, Rita Delgado Marques, Marta Busse-Wicher, Francisco Vilaplana, Katherine Stott, Paul Dupree

Open access · hybridAbstract read
In one paragraph

Article in The Plant journal : for cell and molecular biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
25.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 64 citations in OpenAlex.

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  14. Structure and growth of plant cell walls.Nature reviews. Molecular cell biology · 2024
    Review
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  17. A conditional mutation in a wheat (Triticum aestivum L.) gene regulating root morphology.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Theodora TryfonaDepartment of Biochemistry, School of Biological Sciences, University of Cambridge, Cambridge, CB2 1QW, UK.ORCID 0000-0002-1618-3521
Matthieu BourdonSainsbury Laboratory, University of Cambridge, Cambridge, CB2 1LR, UK.
Rita Delgado MarquesDepartment of Biochemistry, School of Biological Sciences, University of Cambridge, Cambridge, CB2 1QW, UK.
Marta Busse-WicherDepartment of Biochemistry, School of Biological Sciences, University of Cambridge, Cambridge, CB2 1QW, UK.
Francisco VilaplanaDepartment of Chemistry, School of Engineering Sciences in Chemistry, Biotechnology and Health, KTH Royal Institute of Technology, Stockholm, SE-10691, Sweden.ORCID 0000-0003-3572-7798
Katherine StottDepartment of Biochemistry, School of Biological Sciences, University of Cambridge, Cambridge, CB2 1QW, UK.
Paul DupreeDepartment of Biochemistry, School of Biological Sciences, University of Cambridge, Cambridge, CB2 1QW, UK.ORCID 0000-0001-9270-6286
University of Cambridge · GBKTH Royal Institute of Technology · SE

Funding

Biotechnology and Biological Sciences Research CouncilWellcome Trust
6 · The paper itself

Abstract

Xylan is the most abundant non-cellulosic polysaccharide in grass cell walls, and it has important structural roles. The name glucuronoarabinoxylan (GAX) is used to describe this variable hemicellulose. It has a linear backbone of β-1,4-xylose (Xyl) residues that may be substituted with α-1,2-linked (4-O-methyl)-glucuronic acid (GlcA), α-1,3-linked arabinofuranose (Araf), and sometimes acetylation at the O-2 and/or O-3 positions. The role of these substitutions remains unclear, although there is increasing evidence that they affect the way xylan interacts with other cell wall components, particularly cellulose and lignin. Here, we used substitution-dependent endo-xylanase enzymes to investigate the variability of xylan substitution in grass culm cell walls. We show that there are at least three different types of xylan: (i) an arabinoxylan with evenly distributed Araf substitutions without GlcA (AXe); (ii) a glucuronoarabinoxylan with clustered GlcA modifications (GAXc); and (iii) a highly substituted glucuronoarabinoxylan (hsGAX). Immunolocalization of AXe and GAXc in Brachypodium distachyon culms revealed that these xylan types are not restricted to a few cell types but are instead widely detected in Brachypodium cell walls. We hypothesize that there are functionally specialized xylan types within the grass cell wall. The even substitutions of AXe may permit folding and binding on the surface of cellulose fibrils, whereas the more complex substitutions of the other xylans may support a role in the matrix and interaction with other cell wall components.

Indexed as

CelluloseXylansCell WallGlucuronic AcidLigninXyloseCelluloseGlucuronic AcidLigninXylansXylosearabinosylationBrachypodium distachyoncell wall molecular architectureglucuronidationgrass cell wallgrass xylanMiscanthus sinensispolysaccharide substitution patternsxylan-cellulose interactionsxylan-lignin interactions

Identifiers

PMID36602010
PMCPMC10952629
OpenAlexW4313546363

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.