Evidence map›Paper›PMID 36601953›Full record

ArticleCancer science2023

Clinical utility of Todai OncoPanel in the setting of approved comprehensive cancer genomic profiling tests in Japan.

Hidenori Kage, Aya Shinozaki-Ushiku, Kazunaga Ishigaki, Yusuke Sato, Masahiko Tanabe, Shota Tanaka, Michihiro Tanikawa, Kousuke Watanabe, Shingo Kato, Kiwamu Akagi and 21 more

Abstract read
In one paragraph

Article in Cancer science, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

31 authors.

Hidenori KageNext-Generation Precision Medicine Development Laboratory, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan.ORCID https://orcid.org/0000-0003-3658-4442
Aya Shinozaki-UshikuDivision of Integrative Genomics, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan.
Kazunaga IshigakiDepartment of Gastroenterology, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan.
Yusuke SatoDepartment of Urology, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan.
Masahiko TanabeDepartment of Breast and Endocrine Surgery, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan.ORCID https://orcid.org/0000-0002-6558-4399
Shota TanakaDepartment of Neurosurgery, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan.
Michihiro TanikawaDepartment of Obstetrics and Gynecology, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan.
Kousuke WatanabeDepartment of Respiratory Medicine, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan.
Shingo KatoDepartment of Clinical Cancer Genomics, Yokohama City University Hospital, Kanagawa, Japan.ORCID https://orcid.org/0000-0003-4785-5543
Kiwamu AkagiDepartment of Molecular Diagnosis and Cancer Prevention, Saitama Cancer Center, Saitama, Japan.
Keita UchinoDepartment of Medical Oncology, NTT Medical Center Tokyo, Tokyo, Japan.
Kinuko MitaniDepartment of Hematology and Oncology, Dokkyo Medical University, Tochigi, Japan.
Shunji TakahashiDepartment of Medical Oncology, Cancer Institute Hospital, Japanese Foundation for Cancer Research, Tokyo, Japan.
Yuji MiuraDepartment of Medical Oncology and Clinical Genetics Center, Toranomon Hospital, Tokyo, Japan.ORCID https://orcid.org/0000-0002-7091-628X
Sadakatsu IkedaDepartment of Precision Cancer Medicine, Tokyo Medical and Dental University Hospital, Tokyo, Japan.
Yasushi KojimaDepartment of Gastroenterology, National Center for Global Health and Medicine, Tokyo, Japan.
Kiyotaka WatanabeDepartment of Medicine, School of Medicine, Teikyo University, Tokyo, Japan.
Hitoshi MochizukiGenome Analysis Center, Yamanashi Prefectural Central Hospital, Yamanashi, Japan.
Hironori YamaguchiDepartment of Clinical Oncology, Jichi Medical University Hospital, Tochigi, Japan.
Yoshimasa KawazoeDepartment of Artificial Intelligence in Healthcare, The University of Tokyo, Tokyo, Japan.
Kosuke KashiwabaraClinical Research Promotion Center, The University of Tokyo Hospital, Tokyo, Japan.
Shinji KohsakaDivision of Cellular Signaling, National Cancer Center Research Institute, Tokyo, Japan.ORCID https://orcid.org/0000-0001-8651-6136
Kenji TatsunoGenome Science and Medicine Laboratory, RCAST, The University of Tokyo, Tokyo, Japan.
Tetsuo UshikuDepartment of Pathology, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan.
Kazuhiko OheDepartment of Healthcare Information Management, The University of Tokyo Hospital, Tokyo, Japan.
Yutaka YatomiDepartment of Clinical Laboratory, The University Tokyo Hospital, Tokyo, Japan.
Yasuyuki SetoDepartment of Gastrointestinal Surgery, The University of Tokyo, Tokyo, Japan.
Hiroyuki AburataniGenome Science and Medicine Laboratory, RCAST, The University of Tokyo, Tokyo, Japan.
Hiroyuki ManoDivision of Cellular Signaling, National Cancer Center Research Institute, Tokyo, Japan.ORCID https://orcid.org/0000-0003-4645-0181
Kiyoshi MiyagawaLaboratory of Molecular Radiology, Center for Disease Biology and Integrative Medicine, The University of Tokyo, Tokyo, Japan.
Katsutoshi OdaDivision of Integrative Genomics, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan.ORCID https://orcid.org/0000-0002-2468-9573

Funding

Japan Agency for Medical Research and Development JP19kk0205016Sysmex Corporation
6 · The paper itself

Abstract

Comprehensive cancer genome profiling (CGP) has been nationally reimbursed in Japan since June 2019. Less than 10% of the patients have been reported to undergo recommended treatment. Todai OncoPanel (TOP) is a dual DNA-RNA panel as well as a paired tumor-normal matched test. Two hundred patients underwent TOP as part of Advanced Medical Care B with approval from the Ministry of Health, Labour and Welfare between September 2018 and December 2019. Tests were carried out in patients with cancers without standard treatment or when patients had already undergone standard treatment. Data from DNA and RNA panels were analyzed in 198 and 191 patients, respectively. The percentage of patients who were given therapeutic or diagnostic recommendations was 61% (120/198). One hundred and four samples (53%) harbored gene alterations that were detected with the DNA panel and had potential treatment implications, and 14 samples (7%) had a high tumor mutational burden. Twenty-two samples (11.1%) harbored 30 fusion transcripts or MET exon 14 skipping that were detected by the RNA panel. Of those 30 transcripts, 6 had treatment implications and 4 had diagnostic implications. Thirteen patients (7%) were found to have pathogenic or likely pathogenic germline variants and genetic counseling was recommended. Overall, 12 patients (6%) received recommended treatment. In summary, patients benefited from both TOP DNA and RNA panels while following the same indication as the approved CGP tests. (UMIN000033647).

Indexed as

GenomicsNeoplasmsHumansJapanPrecision Medicinecomprehensive genomic profilinggene fusiongenomic medicinegermline findingprecision medicine

Identifiers

PMID36601953
PMCPMC10067384

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.