Evidence map›Paper›PMID 36601945›Full record

ArticleJournal of synchrotron radiation2023

BioSAXS at European Synchrotron Radiation Facility - Extremely Brilliant Source: BM29 with an upgraded source, detector, robot, sample environment, data collection and analysis software.

Mark D Tully, Jerome Kieffer, Martha E Brennich, Raphael Cohen Aberdam, Jean Baptiste Florial, Stephanie Hutin, Markus Oscarsson, Antonia Beteva, Anton Popov, Dihia Moussaoui and 9 more

Open access · goldAbstract read
In one paragraph

Article in Journal of synchrotron radiation, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
4.0field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 58 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Structural analysis of the flexibility of the Ubl2 domain within the papain-like protease of SARS-CoV-2.Acta crystallographica. Section F, Structural biology communications · 2026
    Article
  6. Article
  7. Article
  8. Self-Assembly of Unconventional Triphenylene-Based Frustrated Amphiphile in Solution.Langmuir : the ACS journal of surfaces and colloids · 2026
    Article
  9. Article
  10. Toward Nanodisc Tailoring for SANS Study of Membrane Proteins.Bioengineering (Basel, Switzerland) · 2026
    Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. The extracellular domain ofFrontiers in microbiology · 2025
    Article
  17. Structure-function mapping and mechanistic insights on the SARS CoV2 Nsp1.Protein science : a publication of the Protein Society · 2024
    Article
  18. Article
  19. SARS-CoV2 Nsp1 is a metal-dependent DNA and RNA endonuclease.Biometals : an international journal on the role of metal ions in biology, biochemistry, and medicine · 2024
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 3 institutions in 1 country.

Mark D TullyESRF - The European Synchrotron, 71 Avenue des Martyrs, 38043 Grenoble, France.ORCID 0000-0001-5450-9900
Jerome KiefferESRF - The European Synchrotron, 71 Avenue des Martyrs, 38043 Grenoble, France.ORCID 0000-0002-0730-6577
Martha E BrennichEMBL Grenoble, 71 Avenue des Martyrs, 38042 Grenoble, France.ORCID 0000-0003-0415-8334
Raphael Cohen AberdamEMBL Grenoble, 71 Avenue des Martyrs, 38042 Grenoble, France.
Jean Baptiste FlorialEMBL Grenoble, 71 Avenue des Martyrs, 38042 Grenoble, France.ORCID 0000-0001-8406-0147
Stephanie HutinLPCV, CNRS, 17 Avenue des Martyrs, 38054 Grenoble, France.ORCID 0000-0002-2168-5841
Markus OscarssonESRF - The European Synchrotron, 71 Avenue des Martyrs, 38043 Grenoble, France.
Antonia BetevaESRF - The European Synchrotron, 71 Avenue des Martyrs, 38043 Grenoble, France.
Anton PopovESRF - The European Synchrotron, 71 Avenue des Martyrs, 38043 Grenoble, France.
Dihia MoussaouiESRF - The European Synchrotron, 71 Avenue des Martyrs, 38043 Grenoble, France.ORCID 0000-0002-1605-9619
Pascal TheveneauESRF - The European Synchrotron, 71 Avenue des Martyrs, 38043 Grenoble, France.
Gergely PappEMBL Grenoble, 71 Avenue des Martyrs, 38042 Grenoble, France.ORCID 0000-0002-5702-843X
Jonathan GigmesESRF - The European Synchrotron, 71 Avenue des Martyrs, 38043 Grenoble, France.ORCID 0000-0002-9542-7810
Florent CiprianiEMBL Grenoble, 71 Avenue des Martyrs, 38042 Grenoble, France.
Andrew McCarthyEMBL Grenoble, 71 Avenue des Martyrs, 38042 Grenoble, France.ORCID 0000-0003-4478-0136
Chloe ZubietaLPCV, CNRS, 17 Avenue des Martyrs, 38054 Grenoble, France.
Christoph Mueller-DieckmannESRF - The European Synchrotron, 71 Avenue des Martyrs, 38043 Grenoble, France.ORCID 0000-0003-3625-2747
Gordon LeonardESRF - The European Synchrotron, 71 Avenue des Martyrs, 38043 Grenoble, France.ORCID 0000-0001-5030-0122
Petra PernotESRF - The European Synchrotron, 71 Avenue des Martyrs, 38043 Grenoble, France.
European Synchrotron Radiation Facility · FREuropean Molecular Biology Laboratory · FRCentre National de la Recherche Scientifique · FR

Funding

Agence Nationale de la Recherche ANR-19-CE20-0021Instruct ERIC PID 13317
6 · The paper itself

Abstract

As part of its Extremely Brilliant Source (EBS) upgrade project, the ESRF's BM29 BioSAXS beamline was subject to a significant upgrade and refurbishment. In addition to the replacement of the beamline's original bending magnet source by a two-pole wiggler, leading to an increase in brilliance by a factor of 60, the sample environment of the beamline was almost completely refurbished: a vacuum-compatible Pilatus3 X 2M with a sensitive area of 253.7 mm × 288 mm and frame rates up to 250 Hz was installed, increasing the active area available and thus the q-scaling of scattering images taken; the sample changer was replaced with an upgraded version, allowing more space for customizable sample environments and the installation of two new sample exposure units; the software associated with the beamline was also renewed. In addition, the layout and functionality of the BSXCuBE3 (BioSAXS Customized Beamline Environment) data acquisition software was redesigned, providing an intuitive `user first' approach for inexperienced users, while at the same time maintaining more powerful options for experienced users and beamline staff. Additional features of BSXCuBE3 are queuing of samples; either consecutive sample changer and/or SEC-SAXS (size-exclusion chromatography small-angle X-ray scattering) experiments, including column equilibration were also implemented. Automatic data processing and analysis are now managed via Dahu, an online server with upstream data reduction, data scaling and azimuthal integration built around PyFAI (Python Fast Azimuthal Integration), and data analysis performed using the open source FreeSAS. The results of this automated data analysis pipeline are displayed in ISPyB/ExiSAXS. The upgraded BM29 has been in operation since the post-EBS restart in September 2020, and here a full description of its new hardware and software characteristics together with examples of data obtained are provided.

Indexed as

RoboticsSynchrotronsData CollectionHumansScattering, Small AngleSoftwareX-Ray DiffractionBM29high-throughput small-angle X-ray scatteringmacromolecules in solutionmicrofluidic screeningonline size-exclusion chromatography (SEC-SAXS)SAXS

Identifiers

PMID36601945
PMCPMC9814054
OpenAlexW4313332450

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.