ArticleJournal of synchrotron radiation2023
TomocuPy - efficient GPU-based tomographic reconstruction with asynchronous data processing.
Article in Journal of synchrotron radiation, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
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Who cites it
19 citing papers in PubMed, 37 citations in OpenAlex.
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- Distributed computing for the reconstruction of multi-terabyte tomographic X-ray imaging datasets.Journal of synchrotron radiation · 2026Article
- Data-driven deformation correction in X-ray spectro-tomography with implicit neural networks.Patterns (New York, N.Y.) · 2026Article
- FaXToR: the hard X-ray micro-tomography beamline at the Spanish synchrotron ALBA.Journal of synchrotron radiation · 2026Article
- Turbulence drives arteriovenous remodeling: an experimentally validated multi-scale model of neointimal hyperplasia.Physics in medicine and biology · 2025Article
- Nano-laminography with a transmission X-ray microscope.Journal of synchrotron radiation · 2025Article
- HoToPy: a toolbox for X-ray holo-tomography in Python.Journal of synchrotron radiation · 2025Article
- Quantifying grating defects in X-ray Talbot-Lau interferometry through a comparative study of two fabrication techniques.Scientific reports · 2025Article
- Article
- Accelerating imaging research at large-scale scientific facilities through scientific computing.Journal of synchrotron radiation · 2024Article
- TomoPyUI: a user-friendly tool for rapid tomography alignment and reconstruction.Journal of synchrotron radiation · 2024Article
- Laminography as a tool for imaging large-size samples with high resolution.Journal of synchrotron radiation · 2024Article
- Disturbed flow in the juxta-anastomotic area of an arteriovenous fistula correlates with endothelial loss, acute thrombus formation, and neointimal hyperplasia.American journal of physiology. Heart and circulatory physiology · 2024Article
- Microgravity effects on nonequilibrium melt processing of neodymium titanate: thermophysical properties, atomic structure, glass formation and crystallization.NPJ microgravity · 2024Article
- tomoCAM: fast model-based iterative reconstruction via GPU acceleration and non-uniform fast Fourier transforms.Journal of synchrotron radiation · 2024Article
- Small-angle scattering tensor tomography algorithm for robust reconstruction of complex textures.Acta crystallographica. Section A, Foundations and advances · 2023Article
- A hybrid machine-learning approach for analysis of methane hydrate formation dynamics in porous media with synchrotron CT imaging.Journal of synchrotron radiation · 2023Article
- Carbonate Coprecipitation for Cd and Zn Treatment and Evaluation of Heavy Metal Stability Under Acidic Conditions.Environmental science & technology · 2023Article
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Authors and funding
1 author at 1 institution in 1 country.
Funding
Abstract
Fast 3D data analysis and steering of a tomographic experiment by changing environmental conditions or acquisition parameters require fast, close to real-time, 3D reconstruction of large data volumes. Here a performance-optimized TomocuPy package is presented as a GPU alternative to the commonly used central processing unit (CPU) based TomoPy package for tomographic reconstruction. TomocuPy utilizes modern hardware capabilities to organize a 3D asynchronous reconstruction involving parallel read/write operations with storage drives, CPU-GPU data transfers, and GPU computations. In the asynchronous reconstruction, all the operations are timely overlapped to almost fully hide all data management time. Since most cameras work with less than 16-bit digital output, the memory usage and processing speed are furthermore optimized by using 16-bit floating-point arithmetic. As a result, 3D reconstruction with TomocuPy became 20-30 times faster than its multi-threaded CPU equivalent. Full reconstruction (including read/write operations and methods initialization) of a 2048
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.