Evidence map›Paper›PMID 36599954›Full record

ArticleJournal of human genetics2023

Familial multiple discoid fibromas is linked to a locus on chromosome 5 including the FNIP1 gene.

Irma van de Beek, Iris E Glykofridis, Michael W T Tanck, Monique N H Luijten, Theo M Starink, Jesper A Balk, Paul C Johannesma, Eric Hennekam, Maurice J B van den Hoff, Quinn D Gunst and 9 more

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Article in Journal of human genetics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed, 1 pooled it
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 1 synthesis or guideline pooled it, 13 citations in OpenAlex.

  1. Guideline
  2. Article
  3. Review
  4. Review
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 8 institutions in 2 countries.

Irma van de BeekDepartment of Human Genetics, Amsterdam UMC, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands. i.beek@amsterdamumc.nl.ORCID http://orcid.org/0000-0003-1021-171X
Iris E GlykofridisDepartment of Human Genetics, Cancer Center Amsterdam, Amsterdam UMC, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands.
Michael W T TanckDepartment of Epidemiology and Data Science, Amsterdam UMC, University of Amsterdam, Amsterdam, The Netherlands.ORCID http://orcid.org/0000-0001-9828-4459
Monique N H LuijtenDepartment of Dermatology and GROW School for Oncology and Developmental Biology, Maastricht University Medical Centre, Maastricht, The Netherlands.
Theo M StarinkDepartment of Dermatology, Leiden University Medical Center (LUMC), Leiden, The Netherlands.
Jesper A BalkDepartment of Human Genetics, Cancer Center Amsterdam, Amsterdam UMC, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands.
Paul C JohannesmaDepartment of Surgery, Gelderse Vallei Ziekenhuis, Ede, The Netherlands.
Eric HennekamDivision of Biomedical Genetics, Department of Genetics, University Medical Center Utrecht, Utrecht University, Utrecht, The Netherlands.
Maurice J B van den HoffDepartment of Medical Biology, Amsterdam UMC, University of Amsterdam, Amsterdam, The Netherlands.
Quinn D GunstDepartment of Medical Biology, Amsterdam UMC, University of Amsterdam, Amsterdam, The Netherlands.
Johan J P GilleDepartment of Human Genetics, Amsterdam UMC, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands.
Abeltje M PolstraDepartment of Human Genetics, Amsterdam UMC, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands.
Pieter E PostmusDepartment of Pulmonology, Leiden University Medical Center, Leiden, The Netherlands.
Maurice A M van SteenselLee Kong Chian School of Medicine, Nanyang Technological University, Singapore, Singapore.
Alex V PostmaDepartment of Human Genetics, Amsterdam UMC, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands.
Rob M F WolthuisDepartment of Human Genetics, Cancer Center Amsterdam, Amsterdam UMC, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands.
Fred H MenkoFamily Cancer Clinic, Antoni van Leeuwenhoek Hospital, Amsterdam, The Netherlands.
Arjan C HouwelingDepartment of Human Genetics, Amsterdam UMC, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands.
Quinten WaisfiszDepartment of Human Genetics, Amsterdam UMC, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands.
Amsterdam University Medical Centers · NLLeiden University Medical Center · NLAgency for Science, Technology and Research · SGAmsterdam Neuroscience · NLMaastricht University Medical Centre · NLThe Netherlands Cancer Institute · NLUtrecht University · NLZiekenhuis Gelderse Vallei · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Previously, we reported a series of families presenting with trichodiscomas, inherited in an autosomal dominant pattern. The phenotype was named familial multiple discoid fibromas (FMDF). The genetic cause of FMDF remained unknown so far. Trichodiscomas are skin lesions previously reported to be part of the same spectrum as the fibrofolliculoma observed in Birt-Hogg-Dubé syndrome (BHD), an inherited disease caused by pathogenic variants in the FLCN gene. Given the clinical and histological differences with BHD and the exclusion of linkage with the FLCN locus, the phenotype was concluded to be distinct from BHD. We performed extensive clinical evaluations and genetic testing in ten families with FMDF. We identified a FNIP1 frameshift variant in nine families and genealogical studies showed common ancestry for eight families. Using whole exome sequencing, we identified six additional rare variants in the haplotype surrounding FNIP1, including a missense variant in the PDGFRB gene that was found to be present in all tested patients with FMDF. Genome-wide linkage analysis showed that the locus on chromosome 5 including FNIP1 was the only region reaching the maximal possible LOD score. We concluded that FMDF is linked to a haplotype on chromosome 5. Additional evaluations in families with FMDF are required to unravel the exact genetic cause underlying the phenotype. When evaluating patients with multiple trichodisomas without a pathogenic variant in the FLCN gene, further genetic testing is warranted and can include analysis of the haplotype on chromosome 5.

Indexed as

Birt-Hogg-Dube SyndromeFibromaKidney NeoplasmsCarrier ProteinsChromosomes, Human, Pair 5HumansProto-Oncogene ProteinsSkin NeoplasmsTumor Suppressor ProteinsCarrier ProteinsFNIP1 protein, humanProto-Oncogene ProteinsTumor Suppressor Proteins

Identifiers

PMID36599954
OpenAlexW4313545526

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.