Evidence map›Paper›PMID 36599469›Full record

ArticleJournal for immunotherapy of cancer2023

Human soft tissue sarcomas harbor an intratumoral viral microbiome which is linked with natural killer cell infiltrate and prognosis.

Lauren M Perry, Sylvia M Cruz, Kara T Kleber, Sean J Judge, Morgan A Darrow, Louis B Jones, Ugur N Basmaci, Nikhil Joshi, Matthew L Settles, Blythe P Durbin-Johnson and 7 more

Open access · goldAbstract read
In one paragraph

Article in Journal for immunotherapy of cancer, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 23 citations in OpenAlex.

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  14. Intratumoral NKp46Frontiers in immunology · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 2 institutions in 1 country.

Lauren M Perry *Surgery, University of California Davis, Sacramento, California, USA.ORCID 0000-0002-1306-9950
Sylvia M Cruz *Surgery, University of California Davis, Sacramento, California, USA.ORCID 0000-0001-9007-6639
Kara T KleberSurgery, University of California Davis, Sacramento, California, USA.
Sean J JudgeSurgery, University of California Davis, Sacramento, California, USA.
Morgan A DarrowPathology and Laboratory Medicine, University of California Davis, Sacramento, California, USA.
Louis B JonesOrthopedics, Baylor Scott & White Health, Dallas, TX, Usa.
Ugur N BasmaciSurgery, University of California Davis, Sacramento, California, USA.
Nikhil JoshiBioinformatics Core, University of California Davis Genome Center, Davis, California, USA.
Matthew L SettlesBioinformatics Core, University of California Davis Genome Center, Davis, California, USA.
Blythe P Durbin-JohnsonBioinformatics Core, University of California Davis Genome Center, Davis, California, USA.
Alicia A GingrichSurgery, University of California Davis, Sacramento, California, USA.
Arta Monir MonjazebRadiation Oncology, University of California Davis, Sacramento, California, USA.
Janai Carr-AscherMedicine, University of California Davis, Sacramento, California, USA.
Steve W ThorpeOrthopedic Surgery, University of California Davis, Sacramento, California, USA.
William J MurphyMedicine, University of California Davis, Sacramento, California, USA.ORCID 0000-0002-2793-401X
Jonathan A EisenMedical Microbiology and Immunology, University of California Davis, Davis, California, USA.
Robert J CanterSurgery, University of California Davis, Sacramento, California, USA rjcanter@ucdavis.edu.ORCID 0000-0002-3331-5418
University of California, Davis · USBaylor Scott & White Health · US

Funding

Staff InvestigatorsP30CA093373 · NCI · UNIVERSITY OF CALIFORNIA DAVIS · PI Gina M Dayton · 2002 to 2026
$84.9M
UC Davis Paul Calabresi K12 Clinical Oncology Research Career Development ProgramK12CA138464 · NCI · UNIVERSITY OF CALIFORNIA AT DAVIS · PI BIRKELAND, ANDREW CHARLES, LARA, PRIMO N. · 2011 to 2025
$11.4M
Gene Expression Analysis of Dog Natural Killer Cells Following Immunotherapy with Molecularly Targeted Radionuclide therapy or Inhaled IL-15U01CA224166 · NCI · UNIVERSITY OF CALIFORNIA AT DAVIS · PI CANTER, ROBERT J., MORRIS, ZACHARY SCOTT · 2017 to 2021
$3.0M
UC Davis Comparative Oncology Training ProgramT32CA251007 · NCI · UNIVERSITY OF CALIFORNIA AT DAVIS · PI Robert J. Canter, Xinbin Chen · 2020 to 2026
$1.8M
UC Davis Shared Astrios Cell SorterS10OD018223 · OD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI SHACKLETT, BARBARA L. · 2015 to 2015
$555k
Shared LSRII Cytometer Equipment Application - UC Davis Stem Cell ProgramS10RR026825 · NCRR · UNIVERSITY OF CALIFORNIA AT DAVIS · PI NOLTA, JAN A. · 2010 to 2010
$500k
Acquisition of Covaris E220 and Sciclone G3 systems for high throughput sequencinS10OD010786 · OD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI COMAI, LUCA · 2012 to 2012
$311k
NCI NIH HHS K12 CA138464NCI NIH HHS P30 CA093373NCI NIH HHS T32 CA251007NCI NIH HHS U01 CA224166NCRR NIH HHS S10 RR026825NIH HHS S10 OD010786NIH HHS S10 OD018223
6 · The paper itself

Abstract

backgroundGroundbreaking studies have linked the gut microbiome with immune homeostasis and antitumor immune responses. Mounting evidence has also demonstrated an intratumoral microbiome, including in soft tissue sarcomas (STS), although detailed characterization of the STS intratumoral microbiome is limited. We sought to characterize the intratumoral microbiome in patients with STS undergoing preoperative radiotherapy and surgery, hypothesizing the presence of a distinct intratumoral microbiome with potentially clinically significant microbial signatures.

methodsWe prospectively obtained tumor and stool samples from adult patients with non-metastatic STS using a strict sterile collection protocol to minimize contamination. Metagenomic classification was used to estimate abundance using genus and species taxonomic levels across all classified organisms, and data were analyzed with respect to clinicopathologic factors.

resultsFifteen patients were enrolled. Most tumors were located at an extremity (67%) and were histologic grade 3 (87%). 40% were well-differentiated/dedifferentiated liposarcoma histology. With a median follow-up of 24 months, 4 (27%) patients developed metastases, and 3 (20%) died. Despite overwhelming human DNA (>99%) intratumorally, we detected a small but consistent proportion of bacterial DNA (0.02-0.03%) in all tumors, including

conclusionsWe prospectively demonstrate the presence of a distinct and measurable intratumoral microbiome in patients with STS at multiple time points. Our data suggest that the STS tumor microbiome has prognostic significance with viral relative abundance associated with NK infiltration and oncologic outcome. Additional studies are warranted to further assess the clinical impact of these findings.

Indexed as

SarcomaSoft Tissue NeoplasmsAdultExtremitiesHumansKiller Cells, NaturalPrognosisTumor MicroenvironmentViromeimmunomodulationimmunotherapyprogrammed cell death 1 receptorsarcomatumor biomarkers

Identifiers

PMID36599469
PMCPMC9815021
OpenAlexW4313545226

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.