Evidence map›Paper›PMID 36598506›Full record

ArticleIUCrJ2023

Towards pump-probe single-crystal XFEL refinements for small-unit-cell systems.

Lise Joost Støckler, Lennard Krause, Bjarke Svane, Kasper Tolborg, Bo Richter, Seiya Takahashi, Tomoki Fujita, Hidetaka Kasai, Michihiro Sugahara, Ichiro Inoue and 2 more

Abstract read
In one paragraph

Article in IUCrJ, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Capturing irreversible photoswitching inChemical communications (Cambridge, England) · 2026
    Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Frontiers in chemistry · 2025
    Article
  7. Convergent-beam attosecond x-ray crystallography.Structural dynamics (Melville, N.Y.) · 2025
    Article
  8. Article
  9. Methods in molecular photocrystallography.Acta crystallographica. Section C, Structural chemistry · 2024
    Article
  10. 3D Nanocrystallography and the Imperfect Molecular Lattice.Annual review of physical chemistry · 2024
    Review
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Lise Joost StøcklerCenter for Integrated Materials Research, Department of Chemistry, Aarhus University, Langelandsgade 140, Aarhus 8000, Denmark.
Lennard KrauseCenter for Integrated Materials Research, Department of Chemistry, Aarhus University, Langelandsgade 140, Aarhus 8000, Denmark.ORCID 0000-0003-4583-3746
Bjarke SvaneCenter for Integrated Materials Research, Department of Chemistry, Aarhus University, Langelandsgade 140, Aarhus 8000, Denmark.
Kasper TolborgCenter for Integrated Materials Research, Department of Chemistry, Aarhus University, Langelandsgade 140, Aarhus 8000, Denmark.ORCID 0000-0002-0278-115X
Bo RichterCenter for Integrated Materials Research, Department of Chemistry, Aarhus University, Langelandsgade 140, Aarhus 8000, Denmark.
Seiya TakahashiDepartment of Physics, Faculty of Pure and Applied Sciences and TREMS, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8571, Japan.
Tomoki FujitaDepartment of Physics, Faculty of Pure and Applied Sciences and TREMS, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8571, Japan.
Hidetaka KasaiDepartment of Physics, Faculty of Pure and Applied Sciences and TREMS, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8571, Japan.ORCID 0000-0001-5865-6449
Michihiro SugaharaRIKEN SPring-8 Center, 1-1-1 Kouto, Sayo-cho, Sayo-gun, Hyogo 679-5148, Japan.
Ichiro InoueRIKEN SPring-8 Center, 1-1-1 Kouto, Sayo-cho, Sayo-gun, Hyogo 679-5148, Japan.
Eiji NishiboriDepartment of Physics, Faculty of Pure and Applied Sciences and TREMS, University of Tsukuba, 1-1-1 Tennodai, Tsukuba, Ibaraki 305-8571, Japan.ORCID 0000-0002-4192-6577
Bo Brummerstedt IversenCenter for Integrated Materials Research, Department of Chemistry, Aarhus University, Langelandsgade 140, Aarhus 8000, Denmark.ORCID 0000-0002-4632-1024

Funding

Danish Center for Synchrotron and Neutron Research JP17H05328Danish Center for Synchrotron and Neutron Research JP18H04499Danish Center for Synchrotron and Neutron Research JP19KK0132Danish Center for Synchrotron and Neutron Research JP20H04656Danish Center for Synchrotron and Neutron Research JP21H05235
6 · The paper itself

Abstract

Serial femtosecond crystallography for small-unit-cell systems has so far seen very limited application despite obvious scientific possibilities. This is because reliable data reduction has not been available for these challenging systems. In particular, important intensity corrections such as the partiality correction critically rely on accurate determination of the crystal orientation, which is complicated by the low number of diffraction spots for small-unit-cell crystals. A data reduction pipeline capable of fully automated handling of all steps of data reduction from spot harvesting to merged structure factors has been developed. The pipeline utilizes sparse indexing based on known unit-cell parameters, seed-skewness integration, intensity corrections including an overlap-based combined Ewald sphere width and partiality correction, and a dynamically adjusted post-refinement routine. Using the pipeline, data measured on the compound K

Indexed as

data reductionSerial femtosecond crystallographysingle-crystal structure refinementsmall-unit-cell structuresXFEL

Identifiers

PMID36598506
PMCPMC9812214

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.