Evidence map›Paper›PMID 36598353›Full record

ArticleActa crystallographica. Section F, Structural biology communications2023

Room-temperature serial synchrotron crystallography of the human phosphatase PTP1B.

Shivani Sharma, Ali Ebrahim, Daniel A Keedy

Open access · hybridAbstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 16 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. High-resolution double vision of the allosteric phosphatase PTP1B.Acta crystallographica. Section F, Structural biology communications · 2024
    Article
  8. Article
  9. Introduction to the virtual thematic issue on room-temperature biological crystallography.Acta crystallographica. Section F, Structural biology communications · 2023
    Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Shivani SharmaStructural Biology Initiative, CUNY Advanced Science Research Center, New York, NY 10031, USA.ORCID 0000-0002-1128-4331
Ali EbrahimStructural Biology Initiative, CUNY Advanced Science Research Center, New York, NY 10031, USA.ORCID 0000-0003-2661-381X
Daniel A KeedyStructural Biology Initiative, CUNY Advanced Science Research Center, New York, NY 10031, USA.ORCID 0000-0002-9184-7586
The Graduate Center, CUNY · US

Funding

Training and OutreachP30GM124166 · NIGMS · CORNELL UNIVERSITY · PI RICHARD A. CERIONE · 2019 to 2026
$28.3M
Nanuq Cryocooling SystemR35GM133769 · NIGMS · ADVANCED SCIENCE RESEARCH CENTER · PI Daniel A Keedy · 2019 to 2026
$2.9M
NIGMS NIH HHS P30 GM124166NIGMS NIH HHS R35 GM133769NIGMS NIH HHS R35GM133769
6 · The paper itself

Abstract

Room-temperature X-ray crystallography provides unique insights into protein conformational heterogeneity, but obtaining sufficiently large protein crystals is a common hurdle. Serial synchrotron crystallography (SSX) helps to address this hurdle by allowing the use of many medium- to small-sized crystals. Here, a recently introduced serial sample-support chip system has been used to obtain the first SSX structure of a human phosphatase, specifically protein tyrosine phosphatase 1B (PTP1B) in the unliganded (apo) state. In previous apo room-temperature structures, the active site and allosteric sites adopted alternate conformations, including open and closed conformations of the active-site WPD loop and of a distal allosteric site. By contrast, in our SSX structure the active site is best fitted with a single conformation, but the distal allosteric site is best fitted with alternate conformations. This observation argues for additional nuance in interpreting the nature of allosteric coupling in this protein. Overall, our results illustrate the promise of serial methods for room-temperature crystallography, as well as future avant-garde crystallography experiments, for PTP1B and other proteins.

Indexed as

Phosphoric Monoester HydrolasesSynchrotronsCrystallography, X-RayHumansModels, MolecularProtein ConformationTemperaturePhosphoric Monoester Hydrolasesallosteryapo protein tyrosine phosphatase 1Bphosphatasesroom-temperature serial crystallographyX-ray crystallography

Identifiers

PMID36598353
PMCPMC9813971
OpenAlexW4313447964

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.