Evidence map›Paper›PMID 36597481›Full record

ArticleHeliyon2023

Survival-based CRISPR genetic screens across a panel of permissive cell lines identify common and cell-specific SARS-CoV-2 host factors.

Katherine Chan, Adrian Granda Farias, Hunsang Lee, Furkan Guvenc, Patricia Mero, Kevin R Brown, Henry Ward, Maximilian Billmann, Kamaldeep Aulakh, Audrey Astori and 20 more

Open access · goldAbstract read
In one paragraph

Article in Heliyon, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.4field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 24 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

30 authors at 6 institutions in 2 countries.

Katherine ChanDonnelly Center, 160 College Street, University of Toronto, Toronto, Ontario, Canada, M5S3E1.
Adrian Granda FariasDonnelly Center, 160 College Street, University of Toronto, Toronto, Ontario, Canada, M5S3E1.
Hunsang LeeDonnelly Center, 160 College Street, University of Toronto, Toronto, Ontario, Canada, M5S3E1.
Furkan GuvencDepartment of Molecular Genetics, 1 King's College Circle, University of Toronto, Toronto, Ontario, Canada, M5S1A8.
Patricia MeroDonnelly Center, 160 College Street, University of Toronto, Toronto, Ontario, Canada, M5S3E1.
Kevin R BrownDonnelly Center, 160 College Street, University of Toronto, Toronto, Ontario, Canada, M5S3E1.
Henry WardDepartment of Computer Science and Engineering, University of Minnesota-Twin Cities, Minneapolis, MN, USA.
Maximilian BillmannDepartment of Computer Science and Engineering, University of Minnesota-Twin Cities, Minneapolis, MN, USA.
Kamaldeep AulakhDonnelly Center, 160 College Street, University of Toronto, Toronto, Ontario, Canada, M5S3E1.
Audrey AstoriPrincess Margaret Cancer Center, Toronto, Ontario, Canada.
Shahan HaiderDonnelly Center, 160 College Street, University of Toronto, Toronto, Ontario, Canada, M5S3E1.
Edyta MarconDonnelly Center, 160 College Street, University of Toronto, Toronto, Ontario, Canada, M5S3E1.
Ulrich BraunschweigDonnelly Center, 160 College Street, University of Toronto, Toronto, Ontario, Canada, M5S3E1.
Shuye PuDonnelly Center, 160 College Street, University of Toronto, Toronto, Ontario, Canada, M5S3E1.
Andrea HabsidDonnelly Center, 160 College Street, University of Toronto, Toronto, Ontario, Canada, M5S3E1.
Amy Hin Yan TongDonnelly Center, 160 College Street, University of Toronto, Toronto, Ontario, Canada, M5S3E1.
Natasha Christie-HolmesCombined Containment Level 3 Unit, Temerty Faculty of Medicine, University of Toronto Toronto, Ontario, Canada, M5S3E1.
Patrick BudylowskiDepartment of Molecular Genetics, 1 King's College Circle, University of Toronto, Toronto, Ontario, Canada, M5S1A8.
Ayoob GhalamiOffice of Environmental Health & Safety, University of Toronto, Toronto, Ontario, Canada.
Samira MubarekaSunnybrook Research Institute, Toronto, Ontario, Canada, M5S3E1.
Finlay MaguireDepartment of Community Health and Epidemiology, Faculty of Medicine Dalhousie University, Halifax, Nova Scotia, Canada.
Arinjay BanerjeeVaccine and Infectious Disease Organization, Department of Veterinary Microbiology, University of Saskatchewan, Saskatoon, Saskatchewan, Canada.
Karen L MossmanDepartment of Medicine, McMaster University, Hamilton, Ontario, Canada.
Jack GreenblattDonnelly Center, 160 College Street, University of Toronto, Toronto, Ontario, Canada, M5S3E1.
Scott D Gray-OwenDepartment of Molecular Genetics, 1 King's College Circle, University of Toronto, Toronto, Ontario, Canada, M5S1A8.
Brian RaughtPrincess Margaret Cancer Center, Toronto, Ontario, Canada.
Benjamin J BlencoweDonnelly Center, 160 College Street, University of Toronto, Toronto, Ontario, Canada, M5S3E1.
Mikko TaipaleDonnelly Center, 160 College Street, University of Toronto, Toronto, Ontario, Canada, M5S3E1.
Chad MyersDepartment of Computer Science and Engineering, University of Minnesota-Twin Cities, Minneapolis, MN, USA.
Jason MoffatDonnelly Center, 160 College Street, University of Toronto, Toronto, Ontario, Canada, M5S3E1.
University of Toronto · CAUniversity of Minnesota · USPrincess Margaret Cancer Centre · CADalhousie University · CAMcMaster University · CAUniversity of Saskatchewan · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

SARS-CoV-2 depends on host cell components for infection and replication. Identification of virus-host dependencies offers an effective way to elucidate mechanisms involved in viral infection and replication. If druggable, host factor dependencies may present an attractive strategy for anti-viral therapy. In this study, we performed genome wide CRISPR knockout screens in Vero E6 cells and four human cell lines including Calu-3, UM-UC-4, HEK-293 and HuH-7 to identify genetic regulators of SARS-CoV-2 infection. Our findings identified only

Indexed as

ACE2CRISPR screensGenome-wide loss-of-functionHost factorsSARS-CoV-2

Identifiers

PMID36597481
PMCPMC9800021
OpenAlexW4313334294

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.