Evidence map›Paper›PMID 36596879›Full record

ArticleCommunications biology2023

Rare variant analyses across multiethnic cohorts identify novel genes for refractive error.

Anthony M Musolf, Annechien E G Haarman, Robert N Luben, Jue-Sheng Ong, Karina Patasova, Rolando Hernandez Trapero, Joseph Marsh, Ishika Jain, Riya Jain, Paul Zhiping Wang and 26 more

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 9 citations in OpenAlex.

  1. Light intensity and light/dark cycles regulate refractive development and myopia in mice through circadian rhythm-related genes.Graefe's archive for clinical and experimental ophthalmology = Albrecht von Graefes Archiv fur klinische und experimentelle Ophthalmologie · 2026
    Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. IMI-Myopia Genetics Report.Investigative ophthalmology & visual science · 2025
    Review
  7. Circadian rhythm, ipRGCs, and dopamine signalling in myopia.Graefe's archive for clinical and experimental ophthalmology = Albrecht von Graefes Archiv fur klinische und experimentelle Ophthalmologie · 2024
    Review
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

36 authors at 20 institutions in 16 countries.

Anthony M Musolf *Computational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Baltimore, MD, USA.
Annechien E G Haarman *Department of Ophthalmology, Erasmus Medical Center, Rotterdam, The Netherlands.ORCID 0000-0002-1452-5700
Robert N LubenMRC Epidemiology, University of Cambridge School of Clinical Medicine, Cambridge, UK.
Jue-Sheng OngStatistical Genetics Laboratory, Department of Genetics and Computational Biology, QIMR Berghofer Medical Research Institute, Brisbane, QLD, Australia.ORCID 0000-0002-6062-710X
Karina PatasovaDepartment of Twin Research and Genetic Epidemiology, King's College London, London, UK.
Rolando Hernandez TraperoMRC Human Genetics Unit, Institute of Genetics and Cancer, University of Edinburgh, Western General Hospital, Edinburgh, UK.
Joseph MarshMRC Human Genetics Unit, Institute of Genetics and Cancer, University of Edinburgh, Western General Hospital, Edinburgh, UK.ORCID 0000-0003-4132-0628
Ishika JainComputational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Baltimore, MD, USA.
Riya JainComputational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Baltimore, MD, USA.
Paul Zhiping WangInstitute for Biomedical Sciences, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Deyana D LewisComputational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Baltimore, MD, USA.
Milly S TedjaDepartment of Ophthalmology, Erasmus Medical Center, Rotterdam, The Netherlands.ORCID 0000-0003-0356-9684
Adriana I IglesiasDepartment of Ophthalmology, Erasmus Medical Center, Rotterdam, The Netherlands.ORCID 0000-0001-5532-764X
Hengtong LiData Science Unit, Singapore Eye Research Institute, Singapore National Eye Centre, Singapore, Singapore.
Cameron S CowanInstitute for Molecular and Clinical Ophthalmology Basel, Basel, Switzerland.
Consortium for Refractive Error and Myopia (CREAM)
Ginevra BiinoInstitute of Molecular Genetics, National Research Council of Italy, Pavia, Italy.
Alison P KleinDepartment of Epidemiology, Johns Hopkins University Bloomberg School of Public Health, Baltimore, MD, USA.ORCID 0000-0003-2737-8399
Priya DuggalThe Bloomberg School of Public Health, Johns Hopkins University, Baltimore, MD, USA.ORCID 0000-0001-5809-2081
David A MackeyCentre for Ophthalmology and Visual Science, Lions Eye Institute, University of Western Australia, Perth, WA, Australia.
Caroline HaywardMRC Human Genetics Unit, Institute of Genetics and Cancer, University of Edinburgh, Western General Hospital, Edinburgh, UK.ORCID 0000-0002-9405-9550
Toomas HallerEstonian Genome Center, Institute of Genomics, University of Tartu, Tartu, Estonia.ORCID 0000-0002-5069-6523
Andres MetspaluEstonian Genome Center, Institute of Genomics, University of Tartu, Tartu, Estonia.ORCID 0000-0002-3718-796X
Juho WedenojaDepartment of Ophthalmology, University of Helsinki and Helsinki University Hospital, Helsinki, Finland.ORCID 0000-0002-6155-0378
Olavi PärssinenDepartment of Ophthalmology, Central Hospital of Central Finland, Jyväskylä, Finland.
Ching-Yu ChengCentre for Quantitative Medicine, DUKE-National University of Singapore, Singapore, Singapore.ORCID 0000-0003-0655-885X
Seang-Mei SawSaw Swee Hock School of Public Health, National University Health Systems, National University of Singapore, Singapore, Singapore.
Dwight StambolianDepartment of Ophthalmology, University of Pennsylvania, Philadelphia, PA, USA.
Pirro G HysiDepartment of Twin Research and Genetic Epidemiology, King's College London, London, UK.ORCID 0000-0001-5752-2510
Anthony P KhawajaMRC Epidemiology, University of Cambridge School of Clinical Medicine, Cambridge, UK.ORCID 0000-0001-6802-8585
Veronique VitartMRC Human Genetics Unit, Institute of Genetics and Cancer, University of Edinburgh, Western General Hospital, Edinburgh, UK.ORCID 0000-0002-4991-3797
Christopher J HammondDepartment of Twin Research and Genetic Epidemiology, King's College London, London, UK.ORCID 0000-0002-3227-2620
Cornelia M van DuijnNuffield Department of Population Health, University of Oxford, Oxford, UK.ORCID 0000-0002-2374-9204
Virginie J M VerhoevenDepartment of Ophthalmology, Erasmus Medical Center, Rotterdam, The Netherlands. v.verhoeven@erasmusmc.nl.ORCID 0000-0001-7359-7862
Caroline C W KlaverDepartment of Ophthalmology, Erasmus Medical Center, Rotterdam, The Netherlands. c.c.w.klaver@erasmusmc.nl.ORCID 0000-0002-2355-5258
Joan E Bailey-WilsonComputational and Statistical Genomics Branch, National Human Genome Research Institute, National Institutes of Health, Baltimore, MD, USA. jebw@mail.nih.gov.ORCID 0000-0002-9153-2920
National Institutes of Health · USErasmus MC · NLBeijing Tongren Hospital · CNLions Eye Institute · AUNational University of Singapore · SGQIMR Berghofer Medical Research Institute · AUWestern General Hospital · GBKing's College London · GBMoorfields Eye Hospital NHS Foundation Trust · GBChinese University of Hong Kong · HKJohns Hopkins University · USSun Yat-sen University · CNTampere University · FIUniversity of Wisconsin–Madison · USCase Western Reserve University · USHong Kong Polytechnic University · HKJohannes Gutenberg University Mainz · DEKyoto University · JPSingapore National Eye Center · SGThe University of Melbourne · AU

Funding

TISSUE CULTURE AND HYBRIDOMA MODULEP30EY011373 · NEI · CASE WESTERN RESERVE UNIVERSITY · PI Irina A Pikuleva · 1997 to 2026
$17.7M
THE EPIDEMIOLOGY OF AGE-RELATED OCULAR DISEASEU10EY006594 · NEI · UNIVERSITY OF WISCONSIN-MADISON · PI KLEIN, BARBARA EDEN · 1987 to 2018
$17.3M
Cell Interactions in the Inflamed Intestinal MucosaR01DK075787 · NIDDK · BOSTON CHILDREN'S HOSPITAL · PI JOEL N HIRSCHHORN · 2007 to 2026
$13.1M
ChimeraX -- Next Generation Visualization and Analysis Software for Multiscale ModelingR01GM129325 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERRIN, THOMAS E · 2018 to 2025
$5.2M
A Multi-Center Study To Map Genes for Fuchs'DystrophyR01EY016482 · NEI · CASE WESTERN RESERVE UNIVERSITY · PI IYENGAR, SUDHA K · 2005 to 2009
$3.8M
Genetic Epidemiology of Refractive ErrorR01EY020483 · NEI · UNIVERSITY OF PENNSYLVANIA · PI STAMBOLIAN, DWIGHT EDWARD · 2010 to 2014
$2.9M
International Collaborative Twin Study of Refractive and Glaucoma EndophenotypesR01EY018246 · NEI · DUKE UNIVERSITY · PI YOUNG, TERRI LOIS · 2007 to 2009
$1.8M
Identification of quantitative ocular trait genes in the Beaver Dam EyeR01EY021531 · NEI · JOHNS HOPKINS UNIVERSITY · PI DUGGAL, PRIYA, KLEIN, ALISON P · 2011 to 2013
$1.2M
CWRU Clinical Vision Research InitiativeR21EY015145 · NEI · CASE WESTERN RESERVE UNIVERSITY · PI LASS, JONATHAN H · 2004 to 2008
$750k
Medical Research Council MC_UU_00007/10Medical Research Council MR/N003284/1Medical Research Council MR/T040912/1NEI NIH HHS P30 EY011373NEI NIH HHS R01 EY016482NEI NIH HHS R01 EY018246NEI NIH HHS R01 EY020483NEI NIH HHS R01 EY021531NEI NIH HHS R21 EY015145NEI NIH HHS U10 EY006594NIGMS NIH HHS R01 GM129325Wellcome Trust
6 · The paper itself

Abstract

Refractive error, measured here as mean spherical equivalent (SER), is a complex eye condition caused by both genetic and environmental factors. Individuals with strong positive or negative values of SER require spectacles or other approaches for vision correction. Common genetic risk factors have been identified by genome-wide association studies (GWAS), but a great part of the refractive error heritability is still missing. Some of this heritability may be explained by rare variants (minor allele frequency [MAF] ≤ 0.01.). We performed multiple gene-based association tests of mean Spherical Equivalent with rare variants in exome array data from the Consortium for Refractive Error and Myopia (CREAM). The dataset consisted of over 27,000 total subjects from five cohorts of Indo-European and Eastern Asian ethnicity. We identified 129 unique genes associated with refractive error, many of which were replicated in multiple cohorts. Our best novel candidates included the retina expressed PDCD6IP, the circadian rhythm gene PER3, and P4HTM, which affects eye morphology. Future work will include functional studies and validation. Identification of genes contributing to refractive error and future understanding of their function may lead to better treatment and prevention of refractive errors, which themselves are important risk factors for various blinding conditions.

Indexed as

MyopiaRefractive ErrorsEast Asian PeopleGenetic Predisposition to DiseaseGenome-Wide Association StudyHumansWhite People

Identifiers

PMID36596879
PMCPMC9810640
OpenAlexW4313528573

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.