Evidence map›Paper›PMID 36596463›Full record

ArticleBiology letters2023

Discovery of novel papillomaviruses in the critically endangered Malayan and Chinese pangolins.

Jose Gabriel Nino Barreat, Anselmo Jiro Kamada, Charles Reuben de Souza, Aris Katzourakis

Open access · hybridAbstract read
In one paragraph

Article in Biology letters, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.4field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Genetic characterization of Sus scrofa papillomavirus type 1 from domestic pigs in Guangxi Province, China.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2023
    Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Jose Gabriel Nino BarreatDepartment of Biology, University of Oxford, Oxford OX1 2JD, UK.ORCID 0000-0002-4589-9473
Anselmo Jiro KamadaDepartment of Biology, University of Oxford, Oxford OX1 2JD, UK.ORCID 0000-0002-0437-0151
Charles Reuben de SouzaDepartment of Biology, University of Oxford, Oxford OX1 2JD, UK.ORCID 0000-0001-6386-527X
Aris KatzourakisDepartment of Biology, University of Oxford, Oxford OX1 2JD, UK.ORCID 0000-0003-3328-6204
University of Oxford · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pangolins are scaly and toothless mammals which are distributed across Africa and Asia. Currently, the Malayan, Chinese and Philippine pangolins are designated as critically endangered species. Although few pangolin viruses have been described, their viromes have received more attention following the discovery that they harbour sarbecoviruses related to SARS-CoV-2. Using large-scale genome mining, we discovered novel lineages of papillomaviruses infecting the Malayan and Chinese pangolins. We were able to assemble three complete circular papillomavirus genomes with an intact coding capacity and five additional L1 genes encoding the major capsid protein. Phylogenetic analysis revealed that seven out of eight L1 sequences formed a monophyletic group which is the sister lineage to the Tupaia belangeri papillomavirus 1, isolated from Yunnan province in China. Additionally, a single L1 sequence assembled from a Chinese pangolin was placed in a clade closer to

Indexed as

COVID-19PangolinsAnimalsChinaPhylogenySARS-CoV-2Manis javanicaManis pentadactylaPapillomaviridae

Identifiers

PMID36596463
PMCPMC9810420
OpenAlexW4313453509

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.