Evidence map›Paper›PMID 36595905›Full record

ArticleSTAR protocols2022

Non-invasive chimeric HaloTag labeling to study clustering and diffusion of membrane proteins.

Yiran Chang, Daniel J Dickinson

Abstract read
In one paragraph

Article in STAR protocols, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Yiran ChangDepartment of Molecular Biosciences, University of Texas at Austin, Austin, TX 78712, USA.
Daniel J DickinsonDepartment of Molecular Biosciences, University of Texas at Austin, Austin, TX 78712, USA. Electronic address: daniel.dickinson@austin.utexas.edu.

Funding

Understanding developmental control of cell polarity using single-cell in vivo biochemistryR01GM138443 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI DICKINSON, DANIEL J · 2020 to 2025
$2.4M
Biochemical Basis of Cell Polarization by the PAR Protein SystemR00GM115964 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI DICKINSON, DANIEL J · 2018 to 2020
$747k
Single-molecule enzymology of protein kinasesR21GM144817 · NIGMS · UNIVERSITY OF TEXAS AT AUSTIN · PI DICKINSON, DANIEL J · 2022 to 2023
$424k
NIGMS NIH HHS R00 GM115964NIGMS NIH HHS R01 GM138443NIGMS NIH HHS R21 GM144817
6 · The paper itself

Abstract

As live imaging plays an increasingly critical role in cell biology research, the desire to label and track individual protein molecules in vivo has been growing. To address this, in this protocol we describe steps for sparse labeling using two different HaloTag ligand dyes in C. elegans. This labeling approach is simple, is non-invasive, and preserves the view of the bulk protein population. We further describe how to carry out single-particle tracking experiments and extract information about particle diffusion behavior. For complete details on the use and execution of this protocol, please refer to Chang and Dickinson (2022).

Indexed as

Caenorhabditis elegansMembrane ProteinsAnimalsCluster AnalysisColoring AgentsHydrolasesColoring Agentshaloalkane dehalogenaseHydrolasesMembrane ProteinsBiophysicsCell BiologyMicroscopyModel OrganismsSingle-molecule Assays

Identifiers

PMID36595905
PMCPMC9676207

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.