Evidence map›Paper›PMID 36590910›Full record

ArticleFrontiers in molecular neuroscience2022

Effects of cell size and bicarbonate on single photon response variability in retinal rods.

Polina Geva, Giovanni Caruso, Colin Klaus, Heidi E Hamm, Vsevolod V Gurevich, Emmanuele DiBenedetto, Clint L Makino

Open access · goldAbstract read
In one paragraph

Article in Frontiers in molecular neuroscience, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 46% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Polina GevaDepartment of Physiology and Biophysics, Boston University Chobanian & Avedisian School of Medicine, Boston, MA, United States.
Giovanni CarusoItalian National Research Council, Istituto di Scienze del Patrimonio Culturale, Roma, Italy.
Colin KlausMathematical Biosciences Institute, Ohio State University, Columbus, OH, United States.
Heidi E HammDepartment of Pharmacology, Vanderbilt University, Nashville, TN, United States.
Vsevolod V GurevichDepartment of Pharmacology, Vanderbilt University, Nashville, TN, United States.
Emmanuele DiBenedettoDepartment of Mathematics, Vanderbilt University, Nashville, TN, United States.
Clint L MakinoDepartment of Physiology and Biophysics, Boston University Chobanian & Avedisian School of Medicine, Boston, MA, United States.
Vanderbilt University · USBoston University · USNational Research Council · ITThe Ohio State University · US

Funding

STRUCTURE/FUNCTION STUDIES OF VISUAL ARRESTINR01EY011500 · NEI · VANDERBILT UNIVERSITY · PI T M Iverson · 1997 to 2026
$12.3M
Rod outer segment structure: determinants and its effect on the photon responseR01EY031702 · NEI · BOSTON UNIVERSITY MEDICAL CAMPUS · PI MAKINO, CLINT L · 2020 to 2023
$2.2M
Modulation of Visual Transduction and Retinal Disease by BicarbonateR01EY023980 · NEI · MASSACHUSETTS EYE AND EAR INFIRMARY · PI MAKINO, CLINT L · 2014 to 2017
$1.6M
NEI NIH HHS R01 EY011500NEI NIH HHS R01 EY023980NEI NIH HHS R01 EY031702
6 · The paper itself

Abstract

Accurate photon counting requires that rods generate highly amplified, reproducible single photon responses (SPRs). The SPR is generated within the rod outer segment (ROS), a multilayered structure built from membranous disks that house rhodopsin. Photoisomerization of rhodopsin at the disk rim causes a local depletion of cGMP that closes ion channels in the plasmalemma located nearby with relative rapidity. In contrast, a photoisomerization at the disk center, distant from the plasmalemma, has a delayed impact on the ion channels due to the time required for cGMP redistribution. Radial differences should be greatest in large diameter rods. By affecting membrane guanylate cyclase activity, bicarbonate could impact spatial inhomogeneity in cGMP content. It was previously known that in the absence of bicarbonate, SPRs are larger and faster at the base of a toad ROS (where the ROS attaches to the rest of the cell) than at the distal tip. Given that bicarbonate enters the ROS at the base and diffuses to the tip and that it expedites flash response recovery, there should be an axial concentration gradient for bicarbonate that would accentuate the base-to-tip SPR differences. Seeking to understand how ROS geometry and bicarbonate affect SPR variability, we used mathematical modeling and made electrophysiological recordings of single rods. Modeling predicted and our experiments confirmed minor radial SPR variability in large diameter, salamander rods that was essentially unchanged by bicarbonate. SPRs elicited at the base and tip of salamander rods were similar in the absence of bicarbonate, but when treated with 30 mM bicarbonate, SPRs at the base became slightly faster than those at the tip, verifying the existence of an axial gradient for bicarbonate. The differences were small and unlikely to undermine visual signaling. However, in toad rods with longer ROSs, bicarbonate somehow suppressed the substantial, axial SPR variability that is naturally present in the absence of bicarbonate. Modeling suggested that the axial gradient of bicarbonate might dampen the primary phototransduction cascade at the base of the ROS. This novel effect of bicarbonate solves a mystery as to how toad vision is able to function effectively in extremely dim light.

Indexed as

cyclic GMPmathematical modelingretinarod outer segmentsalamandersingle cell recordingtoadvisual transduction

Identifiers

PMID36590910
PMCPMC9796569
OpenAlexW4311481324

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.