Evidence map›Paper›PMID 36587654›Full record

ArticleGenomics, proteomics & bioinformatics2023

The Jasmine (Jasminum sambac) Genome Provides Insight into the Biosynthesis of Flower Fragrances and Jasmonates.

Gang Chen, Salma Mostafa, Zhaogeng Lu, Ran Du, Jiawen Cui, Yun Wang, Qinggang Liao, Jinkai Lu, Xinyu Mao, Bang Chang and 7 more

Open access · goldAbstract read
In one paragraph

Article in Genomics, proteomics & bioinformatics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.8field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 36 citations in OpenAlex.

  1. Review
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  11. WRKY Transcription Factors inBiomolecules · 2023
    Article
  12. Review
  13. Comparative Genome-Wide Analysis of TwoPlants (Basel, Switzerland) · 2023
    Article
  14. Two jasmonic acid carboxyl methyltransferases inFrontiers in plant science · 2023
    Article
  15. Review
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 4 institutions in 2 countries.

Gang ChenCollege of Horticulture and Plant Protection, Yangzhou University, Yangzhou 225009, China; College of Bioscience and Biotechnology, Yangzhou University, Yangzhou 225009, China.
Salma MostafaCollege of Horticulture and Plant Protection, Yangzhou University, Yangzhou 225009, China; Department of Floriculture, Faculty of Agriculture, Alexandria University, Alexandria 21526, Egypt.
Zhaogeng LuCollege of Horticulture and Plant Protection, Yangzhou University, Yangzhou 225009, China; Key Laboratory of Plant Functional Genomics of the Ministry of Education, Yangzhou University, Yangzhou 225009, China.
Ran DuShenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Key Laboratory of Synthetic Biology, Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen 518120, China.
Jiawen CuiCollege of Horticulture and Plant Protection, Yangzhou University, Yangzhou 225009, China.
Yun WangCollege of Horticulture and Plant Protection, Yangzhou University, Yangzhou 225009, China.
Qinggang LiaoShenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Key Laboratory of Synthetic Biology, Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen 518120, China.
Jinkai LuCollege of Horticulture and Plant Protection, Yangzhou University, Yangzhou 225009, China.
Xinyu MaoCollege of Horticulture and Plant Protection, Yangzhou University, Yangzhou 225009, China.
Bang ChangCollege of Horticulture and Plant Protection, Yangzhou University, Yangzhou 225009, China.
Quan GanCollege of Horticulture and Plant Protection, Yangzhou University, Yangzhou 225009, China.
Li WangCollege of Horticulture and Plant Protection, Yangzhou University, Yangzhou 225009, China.
Zhichao JiaCollege of Horticulture and Plant Protection, Yangzhou University, Yangzhou 225009, China.
Xiulian YangCollege of Landscape Architecture, Nanjing Forestry University, Nanjing 210037, China.
Yingfang ZhuInstitute of Plant Stress Biology, State Key Laboratory of Cotton Biology, Department of Biology, Henan University, Kaifeng 475001, China.
Jianbin YanShenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Key Laboratory of Synthetic Biology, Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen 518120, China. Electronic address: jianbinlab@caas.cn.
Biao JinCollege of Horticulture and Plant Protection, Yangzhou University, Yangzhou 225009, China; Key Laboratory of Plant Functional Genomics of the Ministry of Education, Yangzhou University, Yangzhou 225009, China. Electronic address: bjin@yzu.edu.cn.
Yangzhou University · CNAgricultural Genomics Institute at Shenzhen · CNHenan University · CNNanjing Forestry University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Jasminum sambac (jasmine flower), a world-renowned plant appreciated for its exceptional flower fragrance, is of cultural and economic importance. However, the genetic basis of its fragrance is largely unknown. Here, we present the first de novogenome assembly of J. sambac with 550.12 Mb (scaffold N50 = 40.10 Mb) assembled into 13 pseudochromosomes. Terpene synthase (TPS) genes associated with flower fragrance are considerably amplified in the form of gene clusters through tandem duplications in the genome. Gene clusters within the salicylic acid/benzoic acid/theobromine (SABATH) and benzylalcohol O-acetyltransferase/anthocyanin O-hydroxycinnamoyltransferases/anthranilate N-hydroxycinnamoyl/benzoyltransferase/deacetylvindoline 4-O-acetyltransferase (BAHD) superfamilies were identified to be related to the biosynthesis of phenylpropanoid/benzenoid compounds. Several key genes involved in jasmonate biosynthesis were duplicated, causing an increase in copy numbers. In addition, multi-omics analyses identified various aromatic compounds and many genes involved in fragrance biosynthesis pathways. Furthermore, the roles of JsTPS3 in β-ocimene biosynthesis, as well as JsAOC1 and JsAOS in jasmonic acid biosynthesis, were functionally validated. The genome assembled in this study for J. sambac offers a basic genetic resource for studying floral scent and jasmonate biosynthesis, and provides a foundation for functional genomic research and variety improvements in Jasminum.

Indexed as

JasminumCyclopentanesFlowersOdorantsOxylipinsCyclopentanesjasmonic acidOxylipinsFlower fragranceGenomeJasmine flowerJasminum sambacJasmonate

Identifiers

PMID36587654
PMCPMC10372924
OpenAlexW4313334166

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.