Evidence map›Paper›PMID 36586175›Full record

ArticleComputer methods and programs in biomedicine2023

An accurate and time-efficient deep learning-based system for automated segmentation and reporting of cardiac magnetic resonance-detected ischemic scar.

Daniele M Papetti, Kirsten Van Abeelen, Rhodri Davies, Roberto Menè, Francesca Heilbron, Francesco P Perelli, Jessica Artico, Andreas Seraphim, James C Moon, Gianfranco Parati and 6 more

Open access · bronzeAbstract read
In one paragraph

Article in Computer methods and programs in biomedicine, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 22 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 6 institutions in 3 countries.

Daniele M PapettiDepartment of Informatics, Systems and Communication, University of Milano-Bicocca, Viale Sarca 336, Milano 20126, Italy.
Kirsten Van AbeelenDepartment of Medicine and Surgery, University of Milano-Bicocca, Milan 20126, Italy.
Rhodri DaviesInstitute of Cardiovascular Science, University College London, London WC1E 6DD, UK; Barts Heart Centre, St Bartholomew's Hospital, West Smithfield, London EC1A 7BE, UK; MRC Unit for Lifelong Health and Ageing, University College London, London WC1E 6DD, UK.
Roberto MenèDepartment of Medicine and Surgery, University of Milano-Bicocca, Milan 20126, Italy; Department of Cardiology, IRCCS Istituto Auxologico Italiano, Via Magnasco 2, Milan 20145, Italy.
Francesca HeilbronDepartment of Cardiology, IRCCS Istituto Auxologico Italiano, Via Magnasco 2, Milan 20145, Italy.
Francesco P PerelliDepartment of Medicine and Surgery, University of Milano-Bicocca, Milan 20126, Italy; Department of Cardiology, IRCCS Istituto Auxologico Italiano, Via Magnasco 2, Milan 20145, Italy.
Jessica ArticoInstitute of Cardiovascular Science, University College London, London WC1E 6DD, UK; Barts Heart Centre, St Bartholomew's Hospital, West Smithfield, London EC1A 7BE, UK.
Andreas SeraphimInstitute of Cardiovascular Science, University College London, London WC1E 6DD, UK; Department of Cardiac Electrophysiology, Barts Heart Centre, Barts Health NHS Trust, London EC1A 7BE, UK.
James C MoonInstitute of Cardiovascular Science, University College London, London WC1E 6DD, UK; Barts Heart Centre, St Bartholomew's Hospital, West Smithfield, London EC1A 7BE, UK.
Gianfranco ParatiDepartment of Cardiology, IRCCS Istituto Auxologico Italiano, Via Magnasco 2, Milan 20145, Italy.
Hui XueNational Heart, Lung, and Blood Institute, National Institutes of Health, DHHS, Bethesda, MD, USA. Electronic address: hui.xue@nih.gov.
Peter KellmanBicocca Bioinformatics Biostatistics and Bioimaging Centre (B4), University of Milano-Bicocca, Vedano al Lambro 20854, Italy.
Luigi P BadanoDepartment of Medicine and Surgery, University of Milano-Bicocca, Milan 20126, Italy; Department of Cardiology, IRCCS Istituto Auxologico Italiano, Via Magnasco 2, Milan 20145, Italy.
Daniela BesozziDepartment of Informatics, Systems and Communication, University of Milano-Bicocca, Viale Sarca 336, Milano 20126, Italy; Bicocca Bioinformatics Biostatistics and Bioimaging Centre (B4), University of Milano-Bicocca, Vedano al Lambro 20854, Italy. Electronic address: daniela.besozzi@unimib.it.
Marco S NobileBicocca Bioinformatics Biostatistics and Bioimaging Centre (B4), University of Milano-Bicocca, Vedano al Lambro 20854, Italy; Department of Environmental Sciences, Informatics and Statistics, Ca' Foscari University of Venice, Via Torino 155, Mestre, Venice 30172, Italy. Electronic address: marco.nobile@unive.it.
Camilla TorlascoDepartment of Cardiology, IRCCS Istituto Auxologico Italiano, Via Magnasco 2, Milan 20145, Italy. Electronic address: c.torlasco@auxologico.it.
IRCCS Istituto Auxologico Italiano · ITUniversity of Milano-Bicocca · ITSt Bartholomew's Hospital · GBBarts Health NHS Trust · GBCa' Foscari University of Venice · ITNational Institutes of Health · US

Funding

Gadgetron Global Network and Artificial Intelligence Powered Cardiac ImagingZIAHL006242 · NHLBI · NATIONAL HEART, LUNG, AND BLOOD INSTITUTE · PI KELLMAN, PETER · 2019 to 2023
$2.2M
British Heart Foundation CS/13/1/30327Intramural NIH HHS ZIA HL006242Medical Research Council MC_UU_00019/1Medical Research Council MC_UU_00019/2Medical Research Council MC_UU_00019/4
6 · The paper itself

Abstract

BACKGROUND AND

objectivesMyocardial infarction scar (MIS) assessment by cardiac magnetic resonance provides prognostic information and guides patients' clinical management. However, MIS segmentation is time-consuming and not performed routinely. This study presents a deep-learning-based computational workflow for the segmentation of left ventricular (LV) MIS, for the first time performed on state-of-the-art dark-blood late gadolinium enhancement (DB-LGE) images, and the computation of MIS transmurality and extent.

methodsDB-LGE short-axis images of consecutive patients with myocardial infarction were acquired at 1.5T in two centres between Jan 1, 2019, and June 1, 2021. Two convolutional neural network (CNN) models based on the U-Net architecture were trained to sequentially segment the LV and MIS, by processing an incoming series of DB-LGE images. A 5-fold cross-validation was performed to assess the performance of the models. Model outputs were compared respectively with manual (LV endo- and epicardial border) and semi-automated (MIS, 4-Standard Deviation technique) ground truth to assess the accuracy of the segmentation. An automated post-processing and reporting tool was developed, computing MIS extent (expressed as relative infarcted mass) and transmurality.

resultsThe dataset included 1355 DB-LGE short-axis images from 144 patients (MIS in 942 images). High performance (> 0.85) as measured by the Intersection over Union metric was obtained for both the LV and MIS segmentations on the training sets. The performance for both LV and MIS segmentations was 0.83 on the test sets. Compared to the 4-Standard Deviation segmentation technique, our system was five times quicker (<1 min versus 7 ± 3 min), and required minimal user interaction.

conclusionsOur solution successfully addresses different issues related to automatic MIS segmentation, including accuracy, time-effectiveness, and the automatic generation of a clinical report.

Indexed as

Deep LearningMyocardial InfarctionCicatrixContrast MediaGadoliniumHumansMagnetic Resonance ImagingMagnetic Resonance SpectroscopyContrast MediaGadoliniumCardiac magnetic resonanceCardiovascular imagingDeep learningImage processingMyocardial ischemic scar

Identifiers

PMID36586175
PMCPMC10331164
OpenAlexW4312085007

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.