Evidence map›Paper›PMID 36585921›Full record

ArticleAging2022

Transcriptomic analysis of human ALS skeletal muscle reveals a disease-specific pattern of dysregulated circRNAs.

Dimitrios Tsitsipatis, Krystyna Mazan-Mamczarz, Ying Si, Allison B Herman, Jen-Hao Yang, Abhishek Guha, Yulan Piao, Jinshui Fan, Jennifer L Martindale, Rachel Munk and 6 more

Open access · hybridAbstract read
In one paragraph

Article in Aging, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
3.1field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 24 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 6 institutions in 1 country.

Dimitrios TsitsipatisLaboratory of Genetics and Genomics, National Institute on Aging, Intramural Research Program, National Institutes of Health, Baltimore, MD 21224, USA.
Krystyna Mazan-MamczarzLaboratory of Genetics and Genomics, National Institute on Aging, Intramural Research Program, National Institutes of Health, Baltimore, MD 21224, USA.
Ying SiDepartment of Neurology, The University of Alabama at Birmingham, Birmingham, AL 35294, USA.
Allison B HermanLaboratory of Genetics and Genomics, National Institute on Aging, Intramural Research Program, National Institutes of Health, Baltimore, MD 21224, USA.
Jen-Hao YangLaboratory of Genetics and Genomics, National Institute on Aging, Intramural Research Program, National Institutes of Health, Baltimore, MD 21224, USA.
Abhishek GuhaDepartment of Neurology, The University of Alabama at Birmingham, Birmingham, AL 35294, USA.
Yulan PiaoLaboratory of Genetics and Genomics, National Institute on Aging, Intramural Research Program, National Institutes of Health, Baltimore, MD 21224, USA.
Jinshui FanLaboratory of Genetics and Genomics, National Institute on Aging, Intramural Research Program, National Institutes of Health, Baltimore, MD 21224, USA.
Jennifer L MartindaleLaboratory of Genetics and Genomics, National Institute on Aging, Intramural Research Program, National Institutes of Health, Baltimore, MD 21224, USA.
Rachel MunkLaboratory of Genetics and Genomics, National Institute on Aging, Intramural Research Program, National Institutes of Health, Baltimore, MD 21224, USA.
Xiaoling YangLaboratory of Genetics and Genomics, National Institute on Aging, Intramural Research Program, National Institutes of Health, Baltimore, MD 21224, USA.
Supriyo DeLaboratory of Genetics and Genomics, National Institute on Aging, Intramural Research Program, National Institutes of Health, Baltimore, MD 21224, USA.
Brijesh K SinghCenter for Neural Science and Medicine, Cedars-Sinai Medical Center, Los Angeles, CA 90048, USA.
Ritchie HoCenter for Neural Science and Medicine, Cedars-Sinai Medical Center, Los Angeles, CA 90048, USA.
Myriam GorospeLaboratory of Genetics and Genomics, National Institute on Aging, Intramural Research Program, National Institutes of Health, Baltimore, MD 21224, USA.
Peter H KingDepartment of Neurology, The University of Alabama at Birmingham, Birmingham, AL 35294, USA.
National Institute on Aging · USInstitute on Aging · USBirmingham VA Medical Center · USCedars-Sinai Medical Center · USNational Institutes of Health · USUniversity of Alabama at Birmingham · US

Funding

Smad Signaling in Skeletal Muscle as a Biomarker of Disease Progression in ALSR01NS092651 · NINDS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI KING, PETER H · 2016 to 2020
$1.6M
FGF23: a novel biomarker in ALS and moreR21NS111275 · NINDS · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI KING, PETER H · 2019 to 2019
$422k
BLRD VA I01 BX001148BLRD VA I01 BX004419NINDS NIH HHS R01 NS092651NINDS NIH HHS R21 NS111275
6 · The paper itself

Abstract

Circular RNAs are abundant, covalently closed transcripts that arise in cells through back-splicing and display distinct expression patterns across cells and developmental stages. While their functions are largely unknown, their intrinsic stability has made them valuable biomarkers in many diseases. Here, we set out to examine circRNA patterns in amyotrophic lateral sclerosis (ALS). By RNA-sequencing analysis, we first identified circRNAs and linear RNAs that were differentially abundant in skeletal muscle biopsies from ALS compared to normal individuals. By RT-qPCR analysis, we confirmed that 8 circRNAs were significantly elevated and 10 were significantly reduced in ALS, while the linear mRNA counterparts, arising from shared precursor RNAs, generally did not change. Several of these circRNAs were also differentially abundant in motor neurons derived from human induced pluripotent stem cells (iPSCs) bearing ALS mutations, and across different disease stages in skeletal muscle from a mouse model of ALS (SOD1

Indexed as

Amyotrophic Lateral SclerosisInduced Pluripotent Stem CellsAnimalsDisease Models, AnimalHumansMiceMice, TransgenicMuscle, SkeletalRNA, CircularSuperoxide DismutaseSuperoxide Dismutase-1TranscriptomeRNA, CircularSuperoxide DismutaseSuperoxide Dismutase-1amyotrophic lateral sclerosiscircular RNAshuman skeletal musclehuman spinal cord tissueneurodegenerative disease

Identifiers

PMID36585921
PMCPMC9831722
OpenAlexW4313544862

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.