Evidence map›Paper›PMID 36584296›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2023

The chaperone protein p32 stabilizes HIV-1 Tat and strengthens the p-TEFb/RNAPII/TAR complex promoting HIV transcription elongation.

Chuan Li, Luisa P Mori, Shuang Lyu, Ronald Bronson, Adam J Getzler, Matthew E Pipkin, Susana T Valente

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.8field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Chuan LiDepartment of Immunology and Microbiology, University of Florida Scripps Biomedical Research, Jupiter, FL 33458.ORCID 0000-0002-2773-5037
Luisa P MoriDepartment of Immunology and Microbiology, University of Florida Scripps Biomedical Research, Jupiter, FL 33458.ORCID 0000-0002-1050-2931
Shuang LyuDepartment of Immunology and Microbiology, University of Florida Scripps Biomedical Research, Jupiter, FL 33458.
Ronald BronsonDepartment of Immunology and Microbiology, University of Florida Scripps Biomedical Research, Jupiter, FL 33458.
Adam J GetzlerDepartment of Immunology and Microbiology, University of Florida Scripps Biomedical Research, Jupiter, FL 33458.ORCID 0000-0001-8091-3851
Matthew E PipkinDepartment of Immunology and Microbiology, University of Florida Scripps Biomedical Research, Jupiter, FL 33458.
Susana T ValenteDepartment of Immunology and Microbiology, University of Florida Scripps Biomedical Research, Jupiter, FL 33458.ORCID 0000-0002-7854-7554
Scripps Research Institute · USUniversity of Florida · US

Funding

HOPE - HIV Obstruction by Programmed EpigeneticsUM1AI164559 · NIAID · J. DAVID GLADSTONE INSTITUTES · PI Lishomwa C Ndhlovu, Melanie Maria Ott · 2021 to 2026
$32.2M
Development of Brain Organoids to Study the Impact of HIV-1, Drugs of Abuseand Aging on Cognitive ImpairmentR01DA052027 · NIDA · WEILL MEDICAL COLL OF CORNELL UNIV · PI NIXON, DOUGLAS F · 2020 to 2024
$3.7M
Identification and characterization of chromatin regulators of HIV-1 latencyR61AI140439 · NIAID · SCRIPPS FLORIDA · PI VALENTE, SUSANA T · 2018 to 2020
$2.8M
Host factors regulating HIV latency and reactivationR37AI165137 · NIAID · UNIVERSITY OF FLORIDA · PI Susana T Valente · 2022 to 2026
$2.0M
Identification and characterization of chromatin regulators of HIV-1 latencyR33AI140439 · NIAID · UNIVERSITY OF FLORIDA · PI VALENTE, SUSANA T · 2021 to 2022
$1.8M
NIAID NIH HHS R33 AI140439NIAID NIH HHS R37 AI165137NIAID NIH HHS R61 AI140439NIAID NIH HHS UM1 AI164559NIDA NIH HHS R01 DA052027
6 · The paper itself

Abstract

HIV gene expression is modulated by the combinatorial activity of the HIV transcriptional activator, Tat, host transcription factors, and chromatin remodeling complexes. To identify host factors regulating HIV transcription, we used specific single-guide RNAs and endonuclease-deficient Cas9 to perform chromatin affinity purification of the integrated HIV promoter followed by mass spectrometry. The scaffold protein, p32, also called ASF/SF2 splicing factor-associated protein, was identified among the top enriched factors present in actively transcribing HIV promoters but absent in silenced ones. Chromatin immunoprecipitation analysis confirmed the presence of p32 on active HIV promoters and its enhanced recruitment by Tat. HIV uses Tat to efficiently recruit positive transcription elongation factor b (p-TEFb) (CDK9/CCNT1) to TAR, an RNA secondary structure that forms from the first 59 bp of HIV transcripts, to enhance RNAPII transcriptional elongation. The RNA interference of p32 significantly reduced HIV transcription in primary CD4

Indexed as

HIV-1HIV InfectionsHIV Long Terminal RepeatHumansMolecular ChaperonesPositive Transcriptional Elongation Factor BRNA Polymerase IItat Gene Products, Human Immunodeficiency VirusTranscription FactorsTranscription, GeneticMolecular ChaperonesPositive Transcriptional Elongation Factor BRNA Polymerase IItat Gene Products, Human Immunodeficiency VirusTranscription FactorsHIVp32regulationTattranscription

Identifiers

PMID36584296
PMCPMC9910500
OpenAlexW4313366933

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.