Evidence map›Paper›PMID 36583344›Full record

ArticleNucleic acids research2023

Structural basis of DNA polymerase θ mediated DNA end joining.

Chuxuan Li, Hanwen Zhu, Shikai Jin, Leora M Maksoud, Nikhil Jain, Ji Sun, Yang Gao

Abstract read
In one paragraph

Article in Nucleic acids research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. DNA Repair Mechanisms.Methods in molecular biology (Clifton, N.J.) · 2027
    Review
  2. Review
  3. Article
  4. Article
  5. Coordinated transfer of DNA between Pol θ and Pol δ resets microhomology choice during double-strand break repair.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Multifaceted Nature of DNA Polymerase θ.International journal of molecular sciences · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Chuxuan LiDepartment of Biosciences, Rice University, Houston, TX 77005, USA.
Hanwen ZhuDepartment of Structural Biology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.
Shikai JinDepartment of Biosciences, Rice University, Houston, TX 77005, USA.ORCID 0000-0001-9525-4166
Leora M MaksoudDepartment of Biosciences, Rice University, Houston, TX 77005, USA.
Nikhil JainDepartment of Structural Biology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.
Ji SunDepartment of Structural Biology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.
Yang GaoDepartment of Biosciences, Rice University, Houston, TX 77005, USA.ORCID 0000-0002-4037-0431

Funding

Structural and Pharmacological Study of the KCNQ1/KCNE1 Potassium Channel ComplexR00HL143037 · NHLBI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI SUN, JI · 2020 to 2022
$747k
Structural and Pharmacological Study of the KCNQ1/KCNE1 Potassium Channel ComplexK99HL143037 · NHLBI · ROCKEFELLER UNIVERSITY · PI SUN, JI · 2018 to 2019
$246k
NHLBI NIH HHS K99 HL143037NHLBI NIH HHS R00 HL143037
6 · The paper itself

Abstract

DNA polymerase θ (Pol θ) plays an essential role in the microhomology-mediated end joining (MMEJ) pathway for repairing DNA double-strand breaks. However, the mechanisms by which Pol θ recognizes microhomologous DNA ends and performs low-fidelity DNA synthesis remain unclear. Here, we present cryo-electron microscope structures of the polymerase domain of Lates calcarifer Pol θ with long and short duplex DNA at up to 2.4 Å resolution. Interestingly, Pol θ binds to long and short DNA substrates similarly, with extensive interactions around the active site. Moreover, Pol θ shares a similar active site as high-fidelity A-family polymerases with its finger domain well-closed but differs in having hydrophilic residues surrounding the nascent base pair. Computational simulations and mutagenesis studies suggest that the unique insertion loops of Pol θ help to stabilize short DNA binding and assemble the active site for MMEJ repair. Taken together, our results illustrate the structural basis of Pol θ-mediated MMEJ.

Indexed as

DNA-Directed DNA PolymeraseDNA End-Joining RepairPerciformesDNA Breaks, Double-StrandedDNA Polymerase thetaDNA-Directed DNA PolymeraseDNA Polymerase theta

Identifiers

PMID36583344
PMCPMC9841435

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.