Evidence map›Paper›PMID 36583309›Full record

ArticleNucleic acids research2023

Two modes of Cue2-mediated mRNA cleavage with distinct substrate recognition initiate no-go decay.

Shota Tomomatsu, Atsuya Watanabe, Petr Tesina, Satoshi Hashimoto, Ken Ikeuchi, Sihan Li, Yoshitaka Matsuo, Roland Beckmann, Toshifumi Inada

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 29 citations in OpenAlex.

  1. Collided ribosomes are rescued by the endonuclease Rae1 andbioRxiv : the preprint server for biology · 2026
    Article
  2. Ribosome stalling position, spacing, and A-site occupancy impact translation and cotranslational mRNA decay in plants.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Ribosome-associated quality control and related mechanisms.Nature structural & molecular biology · 2026
    Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Secreted Protein VdCUE Modulates Virulence ofJournal of fungi (Basel, Switzerland) · 2025
    Article
  9. Review
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. A ubiquitin language communicates ribosomal distress.Seminars in cell & developmental biology · 2024
    Review
  18. Article
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Shota TomomatsuDivision of RNA and Gene Regulation, Institute of Medical Science, The University of Tokyo, Minato-Ku 108-8639, Japan.
Atsuya WatanabeGraduate School of Pharmaceutical Sciences, Tohoku University, Sendai 980-8578, Japan.
Petr TesinaGene Center and Department of Biochemistry, Feodor-Lynen-Strasse 25, University of Munich, D-81377 Munich, Germany.
Satoshi HashimotoGraduate School of Pharmaceutical Sciences, Tohoku University, Sendai 980-8578, Japan.ORCID 0000-0002-6445-1885
Ken IkeuchiGraduate School of Pharmaceutical Sciences, Tohoku University, Sendai 980-8578, Japan.
Sihan LiDivision of RNA and Gene Regulation, Institute of Medical Science, The University of Tokyo, Minato-Ku 108-8639, Japan.
Yoshitaka MatsuoDivision of RNA and Gene Regulation, Institute of Medical Science, The University of Tokyo, Minato-Ku 108-8639, Japan.
Roland BeckmannGene Center and Department of Biochemistry, Feodor-Lynen-Strasse 25, University of Munich, D-81377 Munich, Germany.
Toshifumi InadaDivision of RNA and Gene Regulation, Institute of Medical Science, The University of Tokyo, Minato-Ku 108-8639, Japan.ORCID 0000-0002-2695-588X
Tohoku University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ribosome collisions are recognized by E3 ubiquitin ligase Hel2/ZNF598, leading to RQC (ribosome-associated quality control) and to endonucleolytic cleavage and degradation of the mRNA termed NGD (no-go decay). NGD in yeast requires the Cue2 endonuclease and occurs in two modes, either coupled to RQC (NGDRQC+) or RQC uncoupled (NGDRQC-). This is mediated by an unknown mechanism of substrate recognition by Cue2. Here, we show that the ubiquitin binding activity of Cue2 is required for NGDRQC- but not for NGDRQC+, and that it involves the first two N-terminal Cue domains. In contrast, Trp122 of Cue2 is crucial for NGDRQC+. Moreover, Mbf1 is required for quality controls by preventing +1 ribosome frameshifting induced by a rare codon staller. We propose that in Cue2-dependent cleavage upstream of the collided ribosomes (NGDRQC-), polyubiquitination of eS7 is recognized by two N-terminal Cue domains of Cue2. In contrast, for the cleavage within collided ribosomes (NGDRQC+), the UBA domain, Trp122 and the interaction between Mbf1 and uS3 are critical.

Indexed as

EndonucleasesSaccharomyces cerevisiae ProteinsProtein BiosynthesisRibosomesRNA, MessengerSaccharomyces cerevisiaeUbiquitinationUbiquitin-Protein LigasesEndonucleasesHel2 protein, S cerevisiaeRNA, MessengerSaccharomyces cerevisiae ProteinsUbiquitin-Protein Ligases

Identifiers

PMID36583309
PMCPMC9841427
OpenAlexW4313311993

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.