Evidence map›Paper›PMID 36583226›Full record

ArticlePlant physiology2023

Specific suppression of long terminal repeat retrotransposon mobilization in plants.

Anna Brestovitsky, Mayumi Iwasaki, Jungnam Cho, Natthawut Adulyanukosol, Jerzy Paszkowski, Marco Catoni

Open access · hybridAbstract read
In one paragraph

Article in Plant physiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 4 countries.

Anna BrestovitskyThe Sainsbury Laboratory, University of Cambridge, Cambridge CB2 1LR, UK.ORCID 0000-0001-5318-6409
Mayumi IwasakiThe Sainsbury Laboratory, University of Cambridge, Cambridge CB2 1LR, UK.ORCID 0000-0001-6561-4247
Jungnam ChoThe Sainsbury Laboratory, University of Cambridge, Cambridge CB2 1LR, UK.ORCID 0000-0002-4078-7763
Natthawut AdulyanukosolThe Sainsbury Laboratory, University of Cambridge, Cambridge CB2 1LR, UK.ORCID 0000-0001-8869-1480
Jerzy PaszkowskiThe Sainsbury Laboratory, University of Cambridge, Cambridge CB2 1LR, UK.ORCID 0000-0002-1378-5666
Marco CatoniThe Sainsbury Laboratory, University of Cambridge, Cambridge CB2 1LR, UK.ORCID 0000-0002-3258-2522
University of Cambridge · GBChinese Academy of Sciences · CNUniversity of Geneva · CH

Funding

European Research Council
6 · The paper itself

Abstract

The tissue culture passage necessary for the generation of transgenic plants induces genome instability. This instability predominantly involves the uncontrolled mobilization of LTR retrotransposons (LTR-TEs), which are the most abundant class of mobile genetic elements in plant genomes. Here, we demonstrate that in conditions inductive for high LTR-TE mobilization, like abiotic stress in Arabidopsis (Arabidopsis thaliana) and callus culture in rice (Oryza sativa), application of the reverse transcriptase (RT) inhibitor known as Tenofovir substantially affects LTR-TE RT activity without interfering with plant development. We observed that Tenofovir reduces extrachromosomal DNA accumulation and prevents new genomic integrations of the active LTR-TE ONSEN in heat-stressed Arabidopsis seedlings, and transposons of O. sativa 17 and 19 (Tos17 and Tos19) in rice calli. In addition, Tenofovir allows the recovery of plants free from new LTR-TE insertions. We propose the use of Tenofovir as a tool for studies of LTR-TE transposition and for limiting genetic instabilities of plants derived from tissue culture.

Indexed as

ArabidopsisOryzaGenome, PlantRetroelementsTenofovirTerminal Repeat SequencesRetroelementsTenofovir

Identifiers

PMID36583226
PMCPMC10069891
OpenAlexW4313312248

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.