Evidence map›Paper›PMID 36581338›Full record

ArticleCancer genomics & proteomics

Cytomorphology and Gene Expression Signatures of Anchorage-independent Aggregations of Oral Cancer Cells.

Kouhei Sakurai, Akira Nagai, Tatsuya Ando, Yasuhiro Sakai, Yuka Ideta, Yuichiro Hayashi, Junichi Baba, Kenji Mitsudo, Masaharu Akita, Nobutake Yamamichi and 3 more

Open access · diamondAbstract read
In one paragraph

Article in Cancer genomics & proteomics. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
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  3. ChromogenicNon-coding RNA research · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 1 country.

Kouhei SakuraiDepartment of Joint Research Laboratory of Clinical Medicine, School of Medicine, Fujita Health University, Aichi, Japan; kouhei.sakurai@fujita-u.ac.jp.
Akira NagaiStudent Researcher Program, School of Medicine, Fujita Health University, Aichi, Japan.
Tatsuya AndoDepartment of Joint Research Laboratory of Clinical Medicine, School of Medicine, Fujita Health University, Aichi, Japan.
Yasuhiro SakaiDepartment of Joint Research Laboratory of Clinical Medicine, School of Medicine, Fujita Health University, Aichi, Japan.
Yuka IdetaDepartment of Oral and Maxillofacial Surgery, Graduate School of Medicine, Yokohama City University, Kanagawa, Japan.
Yuichiro HayashiDepartment of Oral and Maxillofacial Surgery, Graduate School of Medicine, Yokohama City University, Kanagawa, Japan.
Junichi BabaDepartment of Oral and Maxillofacial Surgery, Graduate School of Medicine, Yokohama City University, Kanagawa, Japan.
Kenji MitsudoDepartment of Oral and Maxillofacial Surgery, Graduate School of Medicine, Yokohama City University, Kanagawa, Japan.
Masaharu AkitaDepartment of Nutrition and Dietetics, School of Family and Consumer Sciences, Kamakura Women's University, Kanagawa, Japan.
Nobutake YamamichiCenter for Epidemiology and Preventive Medicine, The University of Tokyo Hospital, Tokyo, Japan.
Hidetsugu FujigakiDepartment of Advanced Diagnostic System Development, Graduate School of Health Sciences, Fujita Health University, Aichi, Japan.
Taku KatoDepartment of Joint Research Laboratory of Clinical Medicine, School of Medicine, Fujita Health University, Aichi, Japan.
Hiroyasu ItoDepartment of Joint Research Laboratory of Clinical Medicine, School of Medicine, Fujita Health University, Aichi, Japan.
Fujita Health University · JPYokohama City University · JPKamakura Women's University · JPShonan Kamakura General Hospital · JPThe University of Tokyo · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

BACKGROUND/

aimCancer cells with high anchorage independence can survive and proliferate in the absence of adhesion to the extracellular matrix. Under anchorage-independent conditions, cancer cells adhere to each other and form aggregates to overcome various stresses. In this study, we investigated the cytomorphology and gene expression signatures of oral cancer cell aggregates. MATERIALS AND

methodsTwo oral cancer-derived cell lines, SAS and HSC-3 cells, were cultured in a low-attachment plate and their cytomorphologies were observed. The transcriptome between attached and detached SAS cells was examined using gene expression microarrays. Subsequently, gene enrichment analysis and Ingenuity Pathway Analysis were performed. Gene expression changes under attached, detached, and re-attached conditions were measured via RT-qPCR.

resultsWhile SAS cells formed multiple round-shaped aggregates, HSC-3 cells, which had lower anchorage independence, did not form aggregates efficiently. Each SAS cell in the aggregate was linked by desmosomes and tight junctions. Comparative transcriptomic analysis revealed 1,698 differentially expressed genes (DEGs) between attached and detached SAS cells. The DEGs were associated with various functions and processes, including cell adhesion. Moreover, under the detached condition, the expression of some epithelial genes (DSC3, DSP, CLDN1 and OCLN) were up-regulated. The changes in both cytomorphology and epithelial gene expression under the detached condition overall returned to their original ones when cells re-attached.

conclusionThe results suggest specific cytomorphological and gene expression changes in oral cancer cell aggregates. Our findings provide insights into the mechanisms underlying anchorage-independent oral cancer cell aggregation and reveal previously unknown potential diagnostic and therapeutic molecules.

Indexed as

Mouth NeoplasmsTranscriptomeCell AdhesionHumansanchorage-independent aggregationdesmosomegene expressionOral cancertight junctiontranscriptome

Identifiers

PMID36581338
PMCPMC9806669
OpenAlexW4313424666

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.