Evidence map›Paper›PMID 36580473›Full record

ArticlePloS one2022

SPECHT: Self-tuning Plausibility based object detection Enables quantification of Conflict in Heterogeneous multi-scale microscopy.

Ben Cardoen, Timothy Wong, Parsa Alan, Sieun Lee, Joanne Aiko Matsubara, Ivan Robert Nabi, Ghassan Hamarneh

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.3field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Ben CardoenMedical Image Analysis Laboratory, School of Computing Science, Simon Fraser University, Burnaby, British Columbia, Canada.ORCID 0000-0001-6871-1165
Timothy WongDepartment of Cellular and Physiological Sciences, Life Sciences Institute, University of British Columbia, Vancouver, British Columbia, Canada.
Parsa AlanDepartment of Cellular and Physiological Sciences, Life Sciences Institute, University of British Columbia, Vancouver, British Columbia, Canada.
Sieun LeeDepartment of Ophthalmology and Visual Sciences, Eye Care Centre, University of British Columbia, Vancouver, British Columbia, Canada.ORCID 0000-0002-9959-6005
Joanne Aiko MatsubaraDepartment of Ophthalmology and Visual Sciences, Eye Care Centre, University of British Columbia, Vancouver, British Columbia, Canada.ORCID 0000-0002-3689-3117
Ivan Robert NabiDepartment of Cellular and Physiological Sciences, Life Sciences Institute, University of British Columbia, Vancouver, British Columbia, Canada.
Ghassan HamarnehMedical Image Analysis Laboratory, School of Computing Science, Simon Fraser University, Burnaby, British Columbia, Canada.ORCID 0000-0001-5040-7448
University of British Columbia · CASimon Fraser University · CA

Funding

Validation of Retinal Abeta as a Potential Biomarker of Alzheimer's DiseaseR01AG061138 · NIA · VANDERBILT UNIVERSITY MEDICAL CENTER · PI PHAM, WELLINGTON · 2019 to 2023
$3.6M
CIHR PJT-156424CIHR PJT-159845CIHR PJT-175112NIA NIH HHS R01 AG061138
6 · The paper itself

Abstract

Identification of small objects in fluorescence microscopy is a non-trivial task burdened by parameter-sensitive algorithms, for which there is a clear need for an approach that adapts dynamically to changing imaging conditions. Here, we introduce an adaptive object detection method that, given a microscopy image and an image level label, uses kurtosis-based matching of the distribution of the image differential to express operator intent in terms of recall or precision. We show how a theoretical upper bound of the statistical distance in feature space enables application of belief theory to obtain statistical support for each detected object, capturing those aspects of the image that support the label, and to what extent. We validate our method on 2 datasets: distinguishing sub-diffraction limit caveolae and scaffold by stimulated emission depletion (STED) super-resolution microscopy; and detecting amyloid-β deposits in confocal microscopy retinal cross-sections of neuropathologically confirmed Alzheimer's disease donor tissue. Our results are consistent with biological ground truth and with previous subcellular object classification results, and add insight into more nuanced class transition dynamics. We illustrate the novel application of belief theory to object detection in heterogeneous microscopy datasets and the quantification of conflict of evidence in a joint belief function. By applying our method successfully to diffraction-limited confocal imaging of tissue sections and super-resolution microscopy of subcellular structures, we demonstrate multi-scale applicability.

Indexed as

AlgorithmsAlzheimer DiseaseAmyloid beta-PeptidesHumansMicroscopy, ConfocalMicroscopy, FluorescenceAmyloid beta-Peptides

Identifiers

PMID36580473
PMCPMC9799313
OpenAlexW4313270883

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.