Evidence map›Paper›PMID 36580465›Full record

ArticlePloS one2022

Systematic analysis of cilia characteristics and Hedgehog signaling in five immortal cell lines.

Arianna Ericka Gómez, Angela K Christman, Julie Craft Van De Weghe, Malaney Finn, Dan Doherty

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Evaluation of mesenchymal stem cells as anFrontiers in cell and developmental biology · 2024
    Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Arianna Ericka GómezDepartment of Pediatrics, University of Washington, Seattle, Washington, United States of America.ORCID 0000-0002-9334-4130
Angela K ChristmanDepartment of Pediatrics, University of Washington, Seattle, Washington, United States of America.
Julie Craft Van De WegheDepartment of Pediatrics, University of Washington, Seattle, Washington, United States of America.ORCID 0000-0002-4492-6089
Malaney FinnDepartment of Pediatrics, University of Washington, Seattle, Washington, United States of America.
Dan DohertyDepartment of Pediatrics, University of Washington, Seattle, Washington, United States of America.ORCID 0000-0001-9377-028X
University of Washington · US

Funding

Mechanisms of Brain Dysmorphology in MN1 C-Terminal Truncation Syndrome, a Novel Intellectual Developmental Disability Disorder P50HD103524 · NICHD · UNIVERSITY OF WASHINGTON · PI Sandra E Juul · 2020 to 2026
$9.9M
Intellectual and Developmental Disabilities Research CenterU54HD083091 · NICHD · UNIVERSITY OF WASHINGTON · PI MARAVILLA, KENNETH R · 2014 to 2019
$7.9M
Identifying the missing heritability in recessive disorders using Joubert syndrome as a modelR01HD100730 · NICHD · UNIVERSITY OF WASHINGTON · PI DOHERTY, DANIEL · 2020 to 2023
$2.0M
Molecular Medicine Training ProgramT32GM095421 · NIGMS · UNIVERSITY OF WASHINGTON · PI HAWN, THOMAS R, LILES, W. CONRAD · 2011 to 2020
$1.6M
NICHD NIH HHS P50 HD103524NICHD NIH HHS R01 HD100730NICHD NIH HHS U54 HD083091NIGMS NIH HHS T32 GM095421
6 · The paper itself

Abstract

Dysfunction of the primary cilium, a microtubule-based signaling organelle, leads to genetic conditions called ciliopathies. Hedgehog (Hh) signaling is mediated by the primary cilium in vertebrates and is therefore implicated in ciliopathies; however, it is not clear which immortal cell lines are the most appropriate for modeling pathway response in human disease; therefore, we systematically evaluated Hh in five commercially available, immortal mammalian cell lines: ARPE-19, HEK293T, hTERT RPE-1, NIH/3T3, and SH-SY5Y. Under proper conditions, all of the cell lines ciliated adequately for our subsequent experiments, except for SH-SY5Y which were excluded from further analysis. hTERT RPE-1 and NIH/3T3 cells relocalized Hh pathway components Smoothened (SMO) and GPR161 and upregulated Hh target genes in response to pathway stimulation. In contrast, pathway stimulation did not induce target gene expression in ARPE-19 and HEK293T cells, despite SMO and GPR161 relocalization. These data indicate that human hTERT RPE-1 cells and murine NIH/3T3 cells, but not ARPE-19 and HEK293T cells, are suitable for modeling the role of Hh signaling in ciliopathies.

Indexed as

Hedgehog ProteinsNeuroblastomaAnimalsCiliaHEK293 CellsHumansMammalsMiceReceptors, G-Protein-CoupledSmoothened ReceptorHedgehog ProteinsReceptors, G-Protein-CoupledSmoothened Receptor

Identifiers

PMID36580465
PMCPMC9799305
OpenAlexW4313288955

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.