Evidence map›Paper›PMID 36580234›Full record

ArticleFrontiers of medicine2023

Application of StrucGP in medical immunology: site-specific N-glycoproteomic analysis of macrophages.

Pengfei Li, Zexuan Chen, Shanshan You, Yintai Xu, Zhifang Hao, Didi Liu, Jiechen Shen, Bojing Zhu, Wei Dan, Shisheng Sun

Abstract read
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In one paragraph

Article in Frontiers of medicine, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed, 2 pooled it
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 2 syntheses or guidelines pooled it, 16 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Review
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  10. Article
  11. Impaired bisecting GlcNAc reprogrammed M1 polarization of macrophage.Cell communication and signaling : CCS · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Pengfei LiCollege of Life Sciences, Northwest University, Xi'an, 710069, China.
Zexuan ChenCollege of Life Sciences, Northwest University, Xi'an, 710069, China.
Shanshan YouCollege of Life Sciences, Northwest University, Xi'an, 710069, China.
Yintai XuCollege of Life Sciences, Northwest University, Xi'an, 710069, China.
Zhifang HaoCollege of Life Sciences, Northwest University, Xi'an, 710069, China.
Didi LiuCollege of Life Sciences, Northwest University, Xi'an, 710069, China.
Jiechen ShenCollege of Life Sciences, Northwest University, Xi'an, 710069, China.
Bojing ZhuCollege of Life Sciences, Northwest University, Xi'an, 710069, China.
Wei DanCollege of Life Sciences, Northwest University, Xi'an, 710069, China.
Shisheng SunCollege of Life Sciences, Northwest University, Xi'an, 710069, China. suns@nwu.edu.cn.
Northwest University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The structure of N-glycans on specific proteins can regulate innate and adaptive immunity via sensing environmental signals. Meanwhile, the structural diversity of N-glycans poses analytical challenges that limit the exploration of specific glycosylation functions. In this work, we used THP-1-derived macrophages as examples to show the vast potential of a N-glycan structural interpretation tool StrucGP in N-glycoproteomic analysis. The intact glycopeptides of macrophages were enriched and analyzed using mass spectrometry (MS)-based glycoproteomic approaches, followed by the large-scale mapping of site-specific glycan structures via StrucGP. Results revealed that bisected GlcNAc, core fucosylated, and sialylated glycans (e.g., HexNAc

Indexed as

B7-H1 AntigenPolysaccharidesGlycosylationHumansB7-H1 AntigenPolysaccharidesglycopeptidesglycoproteomemacrophageN-glycan structuresPD-L1

Identifiers

PMID36580234
OpenAlexW4313279022

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.