Evidence map›Paper›PMID 36579832›Full record

ArticleHuman molecular genetics2023

Characterization of the TBR1 interactome: variants associated with neurodevelopmental disorders disrupt novel protein interactions.

Elliot Sollis, Joery den Hoed, Marti Quevedo, Sara B Estruch, Arianna Vino, Dick H W Dekkers, Jeroen A A Demmers, Raymond Poot, Pelagia Deriziotis, Simon E Fisher

Open access · hybridAbstract read
In one paragraph

Article in Human molecular genetics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.1field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Elliot SollisLanguage and Genetics Department, Max Planck Institute for Psycholinguistics, Nijmegen, XD 6525, The Netherlands.ORCID 0000-0003-1322-388X
Joery den HoedLanguage and Genetics Department, Max Planck Institute for Psycholinguistics, Nijmegen, XD 6525, The Netherlands.ORCID 0000-0001-6614-876X
Marti QuevedoDepartment of Cell Biology, Erasmus University Medical Center, Rotterdam, CN 3015, The Netherlands.ORCID 0000-0001-7747-7710
Sara B EstruchLanguage and Genetics Department, Max Planck Institute for Psycholinguistics, Nijmegen, XD 6525, The Netherlands.ORCID 0000-0001-7474-6735
Arianna VinoLanguage and Genetics Department, Max Planck Institute for Psycholinguistics, Nijmegen, XD 6525, The Netherlands.
Dick H W DekkersProteomics Center, Erasmus University Medical Center, Rotterdam, CN 3015, The Netherlands.ORCID 0000-0001-7057-6257
Jeroen A A DemmersProteomics Center, Erasmus University Medical Center, Rotterdam, CN 3015, The Netherlands.ORCID 0000-0002-8757-9611
Raymond PootDepartment of Cell Biology, Erasmus University Medical Center, Rotterdam, CN 3015, The Netherlands.ORCID 0000-0002-0498-521X
Pelagia DeriziotisLanguage and Genetics Department, Max Planck Institute for Psycholinguistics, Nijmegen, XD 6525, The Netherlands.ORCID 0000-0001-5544-8345
Simon E FisherLanguage and Genetics Department, Max Planck Institute for Psycholinguistics, Nijmegen, XD 6525, The Netherlands.ORCID 0000-0002-3132-1996
Max Planck Institute for Psycholinguistics · NLErasmus MC · NLRadboud University Nijmegen · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

TBR1 is a neuron-specific transcription factor involved in brain development and implicated in a neurodevelopmental disorder (NDD) combining features of autism spectrum disorder (ASD), intellectual disability (ID) and speech delay. TBR1 has been previously shown to interact with a small number of transcription factors and co-factors also involved in NDDs (including CASK, FOXP1/2/4 and BCL11A), suggesting that the wider TBR1 interactome may have a significant bearing on normal and abnormal brain development. Here, we have identified approximately 250 putative TBR1-interaction partners by affinity purification coupled to mass spectrometry. As well as known TBR1-interactors such as CASK, the identified partners include transcription factors and chromatin modifiers, along with ASD- and ID-related proteins. Five interaction candidates were independently validated using bioluminescence resonance energy transfer assays. We went on to test the interaction of these candidates with TBR1 protein variants implicated in cases of NDD. The assays uncovered disturbed interactions for NDD-associated variants and identified two distinct protein-binding domains of TBR1 that have essential roles in protein-protein interaction.

Indexed as

Neurodevelopmental DisordersT-Box Domain ProteinsAutism Spectrum DisorderForkhead Transcription FactorsHumansIntellectual DisabilityProtein BindingProteinsRepressor ProteinsTranscription FactorsForkhead Transcription FactorsFOXP1 protein, humanProteinsRepressor ProteinsT-Box Domain ProteinsTBR1 protein, humanTranscription Factors

Identifiers

PMID36579832
PMCPMC10117376
OpenAlexW4313281025

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.