Evidence map›Paper›PMID 36579780›Full record

ArticleJournal of medical virology2023

Surveillance for SARS-CoV-2 and its variants in wastewater of tertiary care hospitals correlates with increasing case burden and outbreaks.

Nicole Acosta, Maria A Bautista, Barbara J Waddell, Kristine Du, Janine McCalder, Puja Pradhan, Navid Sedaghat, Chloe Papparis, Alexander Buchner Beaudet, Jianwei Chen and 32 more

Open access · hybridAbstract read
In one paragraph

Article in Journal of medical virology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 32 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

42 authors at 5 institutions in 2 countries.

Nicole AcostaDepartment of Microbiology, Immunology and Infectious Diseases, University of Calgary, Calgary, Canada.
Maria A BautistaDepartment of Biological Sciences, University of Calgary, Calgary, Canada.
Barbara J WaddellDepartment of Microbiology, Immunology and Infectious Diseases, University of Calgary, Calgary, Canada.
Kristine DuDepartment of Microbiology, Immunology and Infectious Diseases, University of Calgary, Calgary, Canada.
Janine McCalderDepartment of Microbiology, Immunology and Infectious Diseases, University of Calgary, Calgary, Canada.
Puja PradhanDepartment of Microbiology, Immunology and Infectious Diseases, University of Calgary, Calgary, Canada.
Navid SedaghatDepartment of Microbiology, Immunology and Infectious Diseases, University of Calgary, Calgary, Canada.ORCID 0000-0002-5363-8513
Chloe PapparisDepartment of Microbiology, Immunology and Infectious Diseases, University of Calgary, Calgary, Canada.
Alexander Buchner BeaudetDepartment of Microbiology, Immunology and Infectious Diseases, University of Calgary, Calgary, Canada.
Jianwei ChenDepartment of Biological Sciences, University of Calgary, Calgary, Canada.
Jennifer Van DoornDepartment of Biological Sciences, University of Calgary, Calgary, Canada.
Kevin XiangDepartment of Biological Sciences, University of Calgary, Calgary, Canada.
Leslie ChanDepartment of Biological Sciences, University of Calgary, Calgary, Canada.
Laura VivasDepartment of Biological Sciences, University of Calgary, Calgary, Canada.
Kashtin LowDepartment of Microbiology, Immunology and Infectious Diseases, University of Calgary, Calgary, Canada.
Xuewen LuDepartment of Mathematics and Statistics, University of Calgary, Calgary, Canada.
Jangwoo LeeDepartment of Microbiology, Immunology and Infectious Diseases, University of Calgary, Calgary, Canada.
Paul WestlundC.E.C. Analytics Ltd., Calgary, Canada.
Thierry ChekouoDepartment of Mathematics and Statistics, University of Calgary, Calgary, Canada.
Xiaotian DaiDepartment of Mathematics and Statistics, University of Calgary, Calgary, Canada.
Jason CabajDepartment of Community Health Sciences, University of Calgary, Calgary, Canada.
Srijak BhatnagarFaculty of Science and Technology, Athabasca University, Athabasca, Alberta, Canada.
Norma RueckerWater Services, City of Calgary, Calgary, Canada.
Gopal AchariDepartment of Civil Engineering, University of Calgary, Calgary, Canada.
Rhonda G ClarkDepartment of Biological Sciences, University of Calgary, Calgary, Canada.
Craig PearceInfection Prevention and Control, Alberta Health Services, Calgary, Canada.
Joe J HarrisonDepartment of Biological Sciences, University of Calgary, Calgary, Canada.
Jon MeddingsDepartment of Medicine, University of Calgary and Alberta Health Services, Calgary, Canada.
Jenine LealDepartment of Microbiology, Immunology and Infectious Diseases, University of Calgary, Calgary, Canada.
Jennifer EllisonInfection Prevention and Control, Alberta Health Services, Calgary, Canada.
Bayan MissaghiDepartment of Medicine, University of Calgary and Alberta Health Services, Calgary, Canada.
Jamil N KanjiDepartment of Medicine, University of Calgary and Alberta Health Services, Calgary, Canada.
Oscar LariosDepartment of Medicine, University of Calgary and Alberta Health Services, Calgary, Canada.
Elissa Rennert-MayDepartment of Microbiology, Immunology and Infectious Diseases, University of Calgary, Calgary, Canada.
Joseph KimDepartment of Medicine, University of Calgary and Alberta Health Services, Calgary, Canada.
Steve E HrudeyDepartment of Laboratory Medicine and Pathology, University of Alberta, Edmonton, Alberta, Canada.
Bonita E LeeDepartment of Pediatrics, University of Alberta, Edmonton, Alberta, Canada.
Xiaoli PangDepartment of Laboratory Medicine and Pathology, University of Alberta, Edmonton, Alberta, Canada.
Kevin FrankowskiAdvancing Canadian Water Assets, University of Calgary, Calgary, Canada.
John ConlyDepartment of Microbiology, Immunology and Infectious Diseases, University of Calgary, Calgary, Canada.
Casey R J HubertDepartment of Biological Sciences, University of Calgary, Calgary, Canada.
Michael D ParkinsDepartment of Microbiology, Immunology and Infectious Diseases, University of Calgary, Calgary, Canada.
University of Calgary · CAAlberta Health Services · CAUniversity of Alberta · CAAthabasca University · CAUniversity of Minnesota · US

Funding

CIHRCIHR 448242
6 · The paper itself

Abstract

Wastewater-based SARS-CoV-2 surveillance enables unbiased and comprehensive monitoring of defined sewersheds. We performed real-time monitoring of hospital wastewater that differentiated Delta and Omicron variants within total SARS-CoV-2-RNA, enabling correlation to COVID-19 cases from three tertiary-care facilities with >2100 inpatient beds in Calgary, Canada. RNA was extracted from hospital wastewater between August/2021 and January/2022, and SARS-CoV-2 quantified using RT-qPCR. Assays targeting R203M and R203K/G204R established the proportional abundance of Delta and Omicron, respectively. Total and variant-specific SARS-CoV-2 in wastewater was compared to data for variant specific COVID-19 hospitalizations, hospital-acquired infections, and outbreaks. Ninety-six percent (188/196) of wastewater samples were SARS-CoV-2 positive. Total SARS-CoV-2 RNA levels in wastewater increased in tandem with total prevalent cases (Delta plus Omicron). Variant-specific assessments showed this increase to be mainly driven by Omicron. Hospital-acquired cases of COVID-19 were associated with large spikes in wastewater SARS-CoV-2 and levels were significantly increased during outbreaks relative to nonoutbreak periods for total SARS-CoV2, Delta and Omicron. SARS-CoV-2 in hospital wastewater was significantly higher during the Omicron-wave irrespective of outbreaks. Wastewater-based monitoring of SARS-CoV-2 and its variants represents a novel tool for passive COVID-19 infection surveillance, case identification, containment, and potentially to mitigate viral spread in hospitals.

Indexed as

COVID-19SARS-CoV-2Disease OutbreaksHumansRNA, ViralTertiary Care CentersWastewaterRNA, ViralWastewaterCOVID-19hospital-acquired infectionprevalentRT-qPCRvariant of concernwastewater-based surveillance

Identifiers

PMID36579780
PMCPMC9880705
OpenAlexW4313278733

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.