Evidence map›Paper›PMID 36578473›Full record

ArticleJournal of structural biology: X2023

Characterizing the resolution and throughput of the Apollo direct electron detector.

Ruizhi Peng, Xiaofeng Fu, Joshua H Mendez, Peter S Randolph, Benjamin E Bammes, Scott M Stagg

Open access · goldAbstract read
In one paragraph

Article in Journal of structural biology: X, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
4.3field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 22 citations in OpenAlex.

  1. LowDoseWizard: rapid and standardized setup of low-dose cryo-TEM imaging in SerialEM.Acta crystallographica. Section D, Structural biology · 2026
    Article
  2. Article
  3. Article
  4. Combining MicroED and native mass spectrometry for structural discovery of enzyme-small molecule complexes.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  5. The Structure of the Drp1 Lattice on Membrane.Journal of molecular biology · 2025
    Article
  6. Article
  7. Article
  8. Fast event-based electron counting for small-molecule structure determination by MicroED.Acta crystallographica. Section C, Structural chemistry · 2025
    Article
  9. Article
  10. Multi-species cryoEM calibration and workflow verification standard.Acta crystallographica. Section F, Structural biology communications · 2024
    Article
  11. Multi-species cryoEM calibration and workflow verification standard.bioRxiv : the preprint server for biology · 2024
    Article
  12. Review
  13. Structure determination by cryoEM at 100 keV.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Ruizhi PengInstitute of Molecular Biophysics, 91 Chieftain Way, Florida State University, Tallahassee, FL 32306, United States.
Xiaofeng FuDepartment of Biological Sciences, 319 Stadium Drive, Tallahassee, FL 32306, United States.
Joshua H MendezSimons Electron Microscopy Center, 89 Convent Avenue, New York, NY 10027, United States.
Peter S RandolphInstitute of Molecular Biophysics, 91 Chieftain Way, Florida State University, Tallahassee, FL 32306, United States.
Benjamin E BammesDirect Electron LP, 13240 Evening Creek Drive South, Suite 311, San Diego, CA 92128, United States.
Scott M StaggInstitute of Molecular Biophysics, 91 Chieftain Way, Florida State University, Tallahassee, FL 32306, United States.
Florida State University · USDirect Electron (United States) · USSimons Foundation · US

Funding

Automated, optimized, intelligent data collection for cryo-EMR01GM143805 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI LANDER, GABRIEL C · 2021 to 2025
$4.7M
NIGMS NIH HHS R01 GM143805
6 · The paper itself

Abstract

Advances in electron detection have been essential to the success of high-resolution cryo-EM structure determination. A new generation of direct electron detector called the Apollo, has been developed by Direct Electron. The Apollo uses a novel event-based MAPS detector custom designed for ultra-fast electron counting. We have evaluated this new camera, finding that it delivers high detective quantum efficiency (DQE) and low coincidence loss, enabling high-quality electron counting data acquisition at up to nearly 80 input electrons per pixel per second. We further characterized the performance of Apollo for single particle cryo-EM on real biological samples. Using mouse apoferritin, Apollo yielded better than 1.9 Å resolution reconstructions at all three tested dose rates from a half-day data collection session each. With longer collection time and improved specimen preparation, mouse apoferritin was reconstructed to 1.66 Å resolution. Applied to a more challenging small protein aldolase, we obtained a 2.24 Å resolution reconstruction. The high quality of the map indicates that the Apollo has sufficiently high DQE to reconstruct smaller proteins and complexes with high-fidelity. Our results demonstrate that the Apollo camera performs well across a broad range of dose rates and is capable of capturing high quality data that produce high-resolution reconstructions for large and small single particle samples.

Indexed as

Cryo-EMDirect electron detectorHigh-resolutionHigh-throughput

Identifiers

PMID36578473
PMCPMC9791170
OpenAlexW4310732161

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.