Evidence map›Paper›PMID 36577977›Full record

ArticleBMC veterinary research2022

An insight into misidentification of the small-subunit ribosomal RNA (18S rRNA) gene sequences of Theileria spp. as Theileria annulata.

Anil Kumar Nehra, Ansu Kumari, Aman Dev Moudgil, Sukhdeep Vohra

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Article in BMC veterinary research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.2field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

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5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Anil Kumar Nehra *Department of Veterinary Parasitology, Lala Lajpat Rai University of Veterinary and Animal Sciences, 125004, Hisar, Haryana, India. anilnehra15@gmail.com.
Ansu Kumari *Department of Veterinary Medicine, Lala Lajpat Rai University of Veterinary and Animal Sciences, 125004, Hisar, Haryana, India.
Aman Dev MoudgilDepartment of Veterinary Parasitology, Lala Lajpat Rai University of Veterinary and Animal Sciences, 125004, Hisar, Haryana, India.
Sukhdeep VohraDepartment of Veterinary Parasitology, Lala Lajpat Rai University of Veterinary and Animal Sciences, 125004, Hisar, Haryana, India.
Lala Lajpat Rai University of Veterinary and Animal Sciences · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThere had been isolated reports of the presence of novel Theileria annulata genotypes based on the 18S rRNA gene sequence data from India, Pakistan and Saudi Arabia; but, these studies were restricted to limited field samples. Additionally, no comparative study has been conducted on all the isolates of this parasite from different countries whose sequences are available in the nucleotide databases. Therefore, we aimed to study the genetic diversity of T. annulata based on all available nearly complete 18S rRNA gene sequences in the GenBank™. Out of a total of 312 gene sequences of T. annulata available in the NCBI database, only 70 nearly complete sequences (> 1527 bp) were used for multiple sequence alignment.

resultsThe maximum likelihood tree obtained using TN93 + G + I model manifested two major clades. All the valid host-cell transforming Theileria species clustered in one clade. The T. annulata designated sequences occupying this clade clustered together, excluding two isolates (DQ287944 and EU083799), and represented the true T. annulata sequences (n = 54). DQ287944 and EU083799 exhibited close association with Theileria lestoquardi. In addition, 14 Indian sequences formed a large monophyletic group with published Theileria orientalis sequences. The broad range of sequence identity (95.8-100%) of T. annulata designated sequences indicated the presence of different Theileria spp. A closer analysis revealed the presence of three Theileria spp., namely, T. annulata, T. orientalis, and two isolates (DQ287944 and EU083799) closely related to T. lestoquardi. The true T. annulata sequences manifested 98.8-100% nucleotide identity within them. EU083799 and 14 misidentified Indian T. annulata sequences exhibited the highest similarity with T. lestoquardi (98.6-98.8%) and T. orientalis (98.0-99.9%) in comparison with the other Theileria spp. of domestic and wild ruminants.

conclusionIn the course of analyzing the genetic diversity of T. annulata, we identified the nearly complete 18S rRNA gene sequences of other Theileria spp. that have not only been misidentified as T. annulata in the GenBank™, but are also published as T. annulata. Moreover, a high level of sequence conservation was noticed in the 18S rRNA gene of true T. annulata and T. orientalis sequences.

Indexed as

Cattle DiseasesTheileriaTheileria annulataTheileriasisAnimalsCattleNucleotidesPhylogenyRNA, Ribosomal, 18SNucleotidesRNA, Ribosomal, 18S18S rRNAGenetic diversityMisidentificationSequence analysisTheileria annulataTheileria spp.

Identifiers

PMID36577977
PMCPMC9795727
OpenAlexW4313340321

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.