Evidence map›Paper›PMID 36577383›Full record

ArticleCell reports2022

Multi-modal characterization and simulation of human epileptic circuitry.

Anatoly Buchin, Rebecca de Frates, Anirban Nandi, Rusty Mann, Peter Chong, Lindsay Ng, Jeremy Miller, Rebecca Hodge, Brian Kalmbach, Soumita Bose and 9 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.6field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
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  7. Spatiotemporal Dynamics of Lateral NaThe Journal of neuroscience : the official journal of the Society for Neuroscience · 2025
    Article
  8. Article
  9. Spatio-temporal dynamics of lateral NabioRxiv : the preprint server for biology · 2025
    Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Large-Scale Mechanistic Models of Brain Circuits with Biophysically and Morphologically Detailed Neurons.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2024
    Review
  15. Review
  16. Article
  17. Review
  18. Cell class-specific electric field entrainment of neural activity.bioRxiv : the preprint server for biology · 2024
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 3 institutions in 1 country.

Anatoly BuchinAllen Institute for Brain Science, Seattle, WA, USA. Electronic address: anat.buchin@gmail.com.
Rebecca de FratesAllen Institute for Brain Science, Seattle, WA, USA.
Anirban NandiAllen Institute for Brain Science, Seattle, WA, USA.
Rusty MannAllen Institute for Brain Science, Seattle, WA, USA.
Peter ChongAllen Institute for Brain Science, Seattle, WA, USA.
Lindsay NgAllen Institute for Brain Science, Seattle, WA, USA.
Jeremy MillerAllen Institute for Brain Science, Seattle, WA, USA.
Rebecca HodgeAllen Institute for Brain Science, Seattle, WA, USA.
Brian KalmbachAllen Institute for Brain Science, Seattle, WA, USA; University of Washington, Seattle, WA, USA.
Soumita BoseAllen Institute for Brain Science, Seattle, WA, USA; CiperHealth, San Francisco, CA, USA.
Ueli RutishauserDepartment of Neurosurgery, Cedars-Sinai Medical Center, Los Angeles, CA 90048, USA; Department of Neurology, Cedars-Sinai Medical Center, Los Angeles, CA 90048, USA; Center for Neural Science and Medicine, Department of Biomedical Sciences, Cedars-Sinai Medical Center, Los Angeles, CA 90048, USA.
Stephen McConougheyAllen Institute for Brain Science, Seattle, WA, USA.
Ed LeinAllen Institute for Brain Science, Seattle, WA, USA; University of Washington, Seattle, WA, USA.
Jim BergAllen Institute for Brain Science, Seattle, WA, USA.
Staci SorensenAllen Institute for Brain Science, Seattle, WA, USA.
Ryder GwinnSwedish Medical Center, Seattle, WA, USA.
Christof KochAllen Institute for Brain Science, Seattle, WA, USA.
Jonathan TingAllen Institute for Brain Science, Seattle, WA, USA; University of Washington, Seattle, WA, USA.
Costas A AnastassiouAllen Institute for Brain Science, Seattle, WA, USA; Department of Neurosurgery, Cedars-Sinai Medical Center, Los Angeles, CA 90048, USA; Department of Neurology, Cedars-Sinai Medical Center, Los Angeles, CA 90048, USA; Board of Governors Regenerative Medicine Institute, Cedars-Sinai Medical Center, Los Angeles, CA 90048, USA; Center for Neural Science and Medicine, Department of Biomedical Sciences, Cedars-Sinai Medical Center, Los Angeles, CA 90048, USA. Electronic address: costas.anastassiou@cshs.org.
Allen Institute for Brain Science · USAllen Institute · USSwedish Medical Center · US

Funding

Mozak: Creating an Expert Community to accelerate neuronal reconstruction at scaleR01MH116247 · NIMH · UNIVERSITY OF WASHINGTON · PI POPOVIC, ZORAN · 2018 to 2022
$3.1M
Multi-modal, large-scale characterization of cellular and cell-type-specific effects with electric stimulation in rodent and human brainR01NS120300 · NINDS · ALLEN INSTITUTE · PI LEE, SOO YEUN · 2020 to 2024
$2.8M
NIMH NIH HHS R01 MH116247NINDS NIH HHS R01 NS120300
6 · The paper itself

Abstract

Temporal lobe epilepsy is the fourth most common neurological disorder, with about 40% of patients not responding to pharmacological treatment. Increased cellular loss is linked to disease severity and pathological phenotypes such as heightened seizure propensity. While the hippocampus is the target of therapeutic interventions, the impact of the disease at the cellular level remains unclear. Here, we show that hippocampal granule cells change with disease progression as measured in living, resected hippocampal tissue excised from patients with epilepsy. We show that granule cells increase excitability and shorten response latency while also enlarging in cellular volume and spine density. Single-nucleus RNA sequencing combined with simulations ascribes the changes to three conductances: BK, Cav2.2, and Kir2.1. In a network model, we show that these changes related to disease progression bring the circuit into a more excitable state, while reversing them produces a less excitable, "early-disease-like" state.

Indexed as

EpilepsyEpilepsy, Temporal LobeComputer SimulationHippocampusHumansNeuronsbiophysicsclassifiersCP: Neuroscienceepilepsygranule cellshippocampushuman neuronsmachine learningmodelingmorphologypatch-clampsimulationsingle-cellsnRNA-seq

Identifiers

PMID36577383
PMCPMC9841067
OpenAlexW4313257095

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.