Evidence map›Paper›PMID 36577173›Full record

ArticleVirology2023

Nef enhances HIV-1 replication and infectivity independently of SERINC5 in CEM T cells.

Peter W Ramirez, Thomas Vollbrecht, Francisco M Acosta, Marissa Suarez, Aaron O Angerstein, Jared Wallace, Ryan M O' Connell, John Guatelli

Open access · hybridAbstract read
In one paragraph

Article in Virology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.7field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. SERINC5 counters retroviruses and non-retroviruses.Frontiers in cellular and infection microbiology · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Peter W RamirezDepartment of Biological Sciences, California State University Long Beach, Long Beach, CA, USA. Electronic address: Peter.Ramirez@csulb.edu.
Thomas VollbrechtDepartment of Medicine, University of California San Diego, La Jolla, CA, USA; VA San Diego Healthcare System, San Diego, CA, USA.
Francisco M AcostaDepartment of Biological Sciences, California State University Long Beach, Long Beach, CA, USA.
Marissa SuarezVA San Diego Healthcare System, San Diego, CA, USA.
Aaron O AngersteinDepartment of Medicine, University of California San Diego, La Jolla, CA, USA; VA San Diego Healthcare System, San Diego, CA, USA.
Jared WallaceDivision of Microbiology and Immunology, Department of Pathology, The University of Utah, Salt Lake City, UT, USA.
Ryan M O' ConnellDivision of Microbiology and Immunology, Department of Pathology, The University of Utah, Salt Lake City, UT, USA.
John GuatelliDepartment of Medicine, University of California San Diego, La Jolla, CA, USA; VA San Diego Healthcare System, San Diego, CA, USA.
University of California San Diego · USCalifornia State University, Long Beach · USUniversity of Utah · USVA San Diego Healthcare System · US

Funding

UCSD/SDSU IRACDAK12GM068524 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI TREJO, JOANN · 2003 to 2025
$24.4M
Enhancement of Infectivity by HIV-1 Nef via Antagonism of SERINC ProteinsR01AI129706 · NIAID · VETERANS MEDICAL RESEARCH FDN/SAN DIEGO · PI GUATELLI, JOHN C. · 2017 to 2021
$2.8M
NIAID NIH HHS R01 AI129706NIGMS NIH HHS K12 GM068524
6 · The paper itself

Abstract

A primary function of HIV-1 Nef is the enhancement of viral infectivity and replication. Whether counteraction of the antiretroviral proteins SERINC3 and SERINC5 is the cause of this positive influence on viral growth-rate and infectivity remains unclear. Here, we utilized CRISPR/Cas9 to knockout SERINC3 and SERINC5 in a leukemic CD4-positive T cell line (CEM) that displays nef-related infectivity and growth-rate phenotypes. Viral replication was attenuated in CEM cells infected with HIV-1 lacking Nef (HIV-1ΔNef). This attenuated growth-rate phenotype was observed regardless of whether the coding regions of the serinc3 or serinc5 genes were intact. Moreover, knockout of serinc5 alone or of both serinc5 and serinc3 together failed to restore the infectivity of HIV1ΔNef virions produced from infected CEM cells. Our results corroborate a similar study using another T-lymphoid cell line (MOLT-3) and indicate that the antagonism of SERINC3 and SERINC5 does not fully explain the virology of HIV-1 lacking Nef.

Indexed as

HIV-1Membrane ProteinsCD4-Positive T-Lymphocytesnef Gene Products, Human Immunodeficiency VirusVirus ReplicationMembrane Proteinsnef Gene Products, Human Immunodeficiency Virusnef protein, Human immunodeficiency virus 1SERINC5 protein, human

Identifiers

PMID36577173
PMCPMC10484624
OpenAlexW4312116781

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.