Evidence map›Paper›PMID 36571975›Full record

ArticleMedical image analysis2023

Explaining the black-box smoothly-A counterfactual approach.

Sumedha Singla, Motahhare Eslami, Brian Pollack, Stephen Wallace, Kayhan Batmanghelich

Abstract read
In one paragraph

Article in Medical image analysis, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed.

  1. Article
  2. Article
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  5. Clinically Explainable Disease Diagnosis Based on Biomarker Activation Map.IEEE transactions on bio-medical engineering · 2026
    Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Review
  12. Human-centered explainability evaluation in clinical decision-making: a critical review of the literature.Journal of the American Medical Informatics Association : JAMIA · 2025
    Review
  13. Review
  14. Artificial intelligence in prostate cancer.Chinese medical journal · 2025
    Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Sumedha SinglaComputer Science Department at the University of Pittsburgh, Pittsburgh, PA, 15206, USA. Electronic address: sumedha.singla@pitt.edu.
Motahhare EslamiSchool of Computer Science, Human-Computer Interaction Institute, Carnegie Mellon University, USA. Electronic address: meslami@andrew.cmu.edu.
Brian PollackDepartment of Biomedical Informatics, the University of Pittsburgh, Pittsburgh, PA, 15206, USA. Electronic address: brp98@pitt.edu.
Stephen WallaceUniversity of Pittsburgh Medical School, Pittsburgh, PA, 15206, USA. Electronic address: wallacesr2@upmc.edu.
Kayhan BatmanghelichDepartment of Biomedical Informatics, the University of Pittsburgh, Pittsburgh, PA, 15206, USA. Electronic address: kayhan@pitt.edu.

Funding

Integrating Multi-Modal Data and Biomechanics in COPD: Toward Robust and Interpretable Biomarkers for Disease Subtyping and ProgressionR01HL141813 · NHLBI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Kayhan Batmanghelich · 2018 to 2026
$4.2M
NHLBI NIH HHS R01 HL141813
6 · The paper itself

Abstract

We propose a BlackBox Counterfactual Explainer, designed to explain image classification models for medical applications. Classical approaches (e.g., , saliency maps) that assess feature importance do not explain how imaging features in important anatomical regions are relevant to the classification decision. Such reasoning is crucial for transparent decision-making in healthcare applications. Our framework explains the decision for a target class by gradually exaggerating the semantic effect of the class in a query image. We adopted a Generative Adversarial Network (GAN) to generate a progressive set of perturbations to a query image, such that the classification decision changes from its original class to its negation. Our proposed loss function preserves essential details (e.g., support devices) in the generated images. We used counterfactual explanations from our framework to audit a classifier trained on a chest X-ray dataset with multiple labels. Clinical evaluation of model explanations is a challenging task. We proposed clinically-relevant quantitative metrics such as cardiothoracic ratio and the score of a healthy costophrenic recess to evaluate our explanations. We used these metrics to quantify the counterfactual changes between the populations with negative and positive decisions for a diagnosis by the given classifier. We conducted a human-grounded experiment with diagnostic radiology residents to compare different styles of explanations (no explanation, saliency map, cycleGAN explanation, and our counterfactual explanation) by evaluating different aspects of explanations: (1) understandability, (2) classifier's decision justification, (3) visual quality, (d) identity preservation, and (5) overall helpfulness of an explanation to the users. Our results show that our counterfactual explanation was the only explanation method that significantly improved the users' understanding of the classifier's decision compared to the no-explanation baseline. Our metrics established a benchmark for evaluating model explanation methods in medical images. Our explanations revealed that the classifier relied on clinically relevant radiographic features for its diagnostic decisions, thus making its decision-making process more transparent to the end-user.

Indexed as

BenchmarkingRadiologyHumansSemanticsChest X-ray diagnosisCounterfactual reasoningExplainable AIInterpretable machine learning

Identifiers

PMID36571975
PMCPMC9835100

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.