Evidence map›Paper›PMID 36571238›Full record

ArticleClinical and experimental immunology2023

Identification of novel NFKB1 and ICOS frameshift variants in patients with CVID.

Anli Liu, Qiang Liu, Shaoqiu Leng, Xiaoyu Zhang, Qi Feng, Jun Peng, Gege Feng

Open access · bronzeAbstract read
In one paragraph

Article in Clinical and experimental immunology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed, 1 pooled it
0.3field-weighted citation impact, top 48% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 1 synthesis or guideline pooled it, 3 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Anli LiuDepartment of Hematology, Qilu Hospital, Cheeloo College of Medicine, Shandong University, Jinan, China.ORCID 0000-0001-5543-5819
Qiang LiuDepartment of Hematology, Qilu Hospital, Cheeloo College of Medicine, Shandong University, Jinan, China.
Shaoqiu LengDepartment of Hematology, Qilu Hospital, Cheeloo College of Medicine, Shandong University, Jinan, China.
Xiaoyu ZhangDepartment of Hematology, Qilu Hospital, Cheeloo College of Medicine, Shandong University, Jinan, China.
Qi FengDepartment of Hematology, Qilu Hospital, Cheeloo College of Medicine, Shandong University, Jinan, China.
Jun PengDepartment of Hematology, Qilu Hospital, Cheeloo College of Medicine, Shandong University, Jinan, China.
Gege FengDepartment of Hematology, Qilu Hospital, Cheeloo College of Medicine, Shandong University, Jinan, China.
Qilu Hospital of Shandong University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Common variable immunodeficiency (CVID) is a 'late-onset' primary immunodeficiency characterized by variable manifestations and genetic heterogeneity. A monogenic cause of CVID has been reported in 10% of patients. In this study, we identified two novel pathogenic variants implicated in monogenic CVID by whole exome sequencing (WES) analysis: a heterozygous nuclear factor κB subunit 1 (NFKB1) p.G686fs mutation and a homozygous inducible T-cell co-stimulator (ICOS) p.L96Sfs mutation. The predicted crystal models indicated premature truncation of the two mutated proteins. Both variants were demonstrated as loss-of-function mutations and were associated with overlapped manifestations of respiratory fungal infection and splenomegaly. We further performed a detailed assessment of immunologic phenotypes and impaired lymphocyte functions in patients. Moreover, we discovered an association between monoclonal T-large granular lymphocyte proliferation and ICOS-deficient CVID for the first time. These observations lead to a new perspective on the underlying genetic heterogeneity of CVID.

Indexed as

Common Variable ImmunodeficiencyHumansInducible T-Cell Co-Stimulator ProteinMutationNF-kappa B p50 SubunitPhenotypeICOS protein, humanInducible T-Cell Co-Stimulator ProteinNF-kappa B p50 SubunitNFKB1 protein, humanCVIDICOSmonogenicNFKB1

Identifiers

PMID36571238
PMCPMC9993461
OpenAlexW4312196197

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.