Evidence map›Paper›PMID 36569939›Full record

Trial reportFrontiers in immunology2022

Integrative transcriptomic analysis in human and mouse model of anaphylaxis identifies gene signatures associated with cell movement, migration and neuroinflammatory signalling.

Matija Rijavec, Aleš Maver, Paul J Turner, Keli Hočevar, Mitja Košnik, Amnah Yamani, Simon P Hogan, Adnan Custovic, Borut Peterlin, Peter Korošec

Open access · goldAbstract readRandomized Controlled Trial
In one paragraph

Trial report in Frontiers in immunology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Markedly Increased Diamine Oxidase During Acute Anaphylaxis Is Associated With an Underlying Clonal Mast Cell Disorder.Clinical and experimental allergy : journal of the British Society for Allergy and Clinical Immunology · 2026
    Article
  2. The role of neutrophils in allergic disease.Clinical and experimental immunology · 2025
    Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 3 countries.

Matija RijavecUniversity Clinic of Respiratory and Allergic Diseases Golnik, Golnik, Slovenia.
Aleš MaverClinical Institute of Medical Genetics, University Medical Centre, Ljubljana, Slovenia.
Paul J TurnerNational Heart and Lung Institute, Imperial College London, London, United Kingdom.
Keli HočevarClinical Institute of Medical Genetics, University Medical Centre, Ljubljana, Slovenia.
Mitja KošnikUniversity Clinic of Respiratory and Allergic Diseases Golnik, Golnik, Slovenia.
Amnah YamaniDepartment of Pathology, Michigan Medicine, University of Michigan, Ann Arbor, MI, United States.
Simon P HoganDepartment of Pathology, Michigan Medicine, University of Michigan, Ann Arbor, MI, United States.
Adnan CustovicNational Heart and Lung Institute, Imperial College London, London, United Kingdom.
Borut PeterlinClinical Institute of Medical Genetics, University Medical Centre, Ljubljana, Slovenia.
Peter KorošecUniversity Clinic of Respiratory and Allergic Diseases Golnik, Golnik, Slovenia.
Ljubljana University Medical Centre · SIUniversity Clinic of Pulmonary and Allergic Diseases Golnik · SIImperial College London · GBMichigan Medicine · US

Funding

Department of HealthMedical Research Council MR/K002449/1Medical Research Council MR/K002449/2Medical Research Council MR/S002359/1Medical Research Council MR/S025340/1Medical Research Council MR/T031565/1Medical Research Council MR/W028352/1
6 · The paper itself

Abstract

Background: Anaphylaxis is an acute life-threatening allergic reaction and a concern at a global level; therefore, further progress in understanding the underlying mechanisms and more effective strategies for diagnosis, prevention and management are needed. Objective: We sought to identify the global architecture of blood transcriptomic features of anaphylaxis by integrating expression data from human patients and mouse model of anaphylaxis. Methods: Bulk RNA-sequencings of peripheral whole blood were performed in: i) 14 emergency department (ED) patients with acute anaphylaxis, predominantly to Results: 1023 genes were commonly and significantly dysregulated during anaphylaxis in ED and DBPCFC patients; of those genes, 29 were also dysregulated in the mouse model. Cell-type-specific gene expression profiles showed a rapid downregulation of blood basophil and upregulation of neutrophil signature in ED and DBPCFC patients and the mouse model, but no consistent and/or significant differences were found for other blood cells. Functional and pathway analysis demonstrated that human and mouse blood transcriptomic signatures of anaphylaxis follow trajectories of upregulation of cell movement, migration and neuroinflammatory signalling, and downregulation of lipid activating nuclear receptors signalling. Conclusion: Our study highlights the matched and extensive blood transcriptomic changes and suggests the involvement of discrete cellular components and upregulation of migration and neuroinflammatory pathways during anaphylaxis.

Indexed as

AnaphylaxisAllergensAnimalsBasophilsCell MovementDisease Models, AnimalHumansMiceTranscriptomeAllergensanaphylaxisbasophilscell movementlipid activating nuclear receptors signalingmigrationneuroinflammatory signalingneutrophilstranscriptome analysis

Identifiers

PMID36569939
PMCPMC9772259
OpenAlexW4311850779

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.