Evidence map›Paper›PMID 36566390›Full record

ArticleThe journal of physical chemistry letters2023

X-ray Emission Spectroscopy of Single Protein Crystals Yields Insights into Heme Enzyme Intermediates.

Sahand Emamian, Kendra A Ireland, Vatsal Purohit, Kirklin L McWhorter, Olga Maximova, Winter Allen, Scott Jensen, Diego M Casa, Yulia Pushkar, Katherine M Davis

Open access · greenAbstract read
In one paragraph

Article in The journal of physical chemistry letters, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.5field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 8 citations in OpenAlex.

  1. Time-resolved Mn KThe Journal of biological chemistry · 2026
    Article
  2. Article
  3. A database overview of metal-coordination distances in metalloproteins.Acta crystallographica. Section D, Structural biology · 2024
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Sahand EmamianDepartment of Physics, Emory University, Atlanta, Georgia 30322, United States.ORCID 0000-0002-0607-4460
Kendra A IrelandDepartment of Chemistry, Emory University, Atlanta, Georgia 30322, United States.ORCID 0000-0003-0986-5142
Vatsal PurohitDepartment of Chemistry, Emory University, Atlanta, Georgia 30322, United States.ORCID 0000-0002-8947-3554
Kirklin L McWhorterDepartment of Chemistry, Emory University, Atlanta, Georgia 30322, United States.
Olga MaximovaDepartment of Physics and Astronomy, Purdue University, West Lafayette, Indiana 47907, United States.ORCID 0000-0001-7789-6683
Winter AllenDepartment of Physics and Astronomy, Purdue University, West Lafayette, Indiana 47907, United States.
Scott JensenDepartment of Physics and Astronomy, Purdue University, West Lafayette, Indiana 47907, United States.ORCID 0000-0002-8446-4800
Diego M CasaAdvanced Photon Source, Argonne National Laboratory, Lemont, Illinois 60439, United States.ORCID 0000-0003-4928-0720
Yulia PushkarDepartment of Physics and Astronomy, Purdue University, West Lafayette, Indiana 47907, United States.ORCID 0000-0001-7949-6472
Katherine M DavisDepartment of Chemistry, Emory University, Atlanta, Georgia 30322, United States.ORCID 0000-0002-0258-8907
Emory University · USPurdue University West Lafayette · USArgonne National Laboratory · US

Funding

Electric Field-stimulated Protein MechanicsP41GM118217 · NIGMS · UNIVERSITY OF CHICAGO · PI RANGANATHAN, RAMA · 2019 to 2021
$5.3M
Learning the Steps to Metalloenzyme ChoreographyR00GM129460 · NIGMS · EMORY UNIVERSITY · PI DAVIS, KATHERINE MARIE · 2020 to 2022
$747k
NIGMS NIH HHS P41 GM118217NIGMS NIH HHS R00 GM129460
6 · The paper itself

Abstract

Enzyme reactivity is often enhanced by changes in oxidation state, spin state, and metal-ligand covalency of associated metallocofactors. The development of spectroscopic methods for studying these processes coincidentally with structural rearrangements is essential for elucidating metalloenzyme mechanisms. Herein, we demonstrate the feasibility of collecting X-ray emission spectra of metalloenzyme crystals at a third-generation synchrotron source. In particular, we report the development of a von Hamos spectrometer for the collection of Fe Kβ emission optimized for analysis of dilute biological samples. We further showcase its application in crystals of the immunosuppressive heme-dependent enzyme indoleamine 2,3-dioxygenase. Spectra from protein crystals in different states were compared with relevant reference compounds. Complementary density functional calculations assessing covalency support our spectroscopic analysis and identify active site conformations that correlate to high- and low-spin states. These experiments validate the suitability of an X-ray emission approach for determining spin states of previously uncharacterized metalloenzyme reaction intermediates.

Indexed as

HemeMetalloproteinsCatalytic DomainMetalsSpectrometry, X-Ray EmissionHemeMetalloproteinsMetals

Identifiers

PMID36566390
PMCPMC9990082
OpenAlexW4312141102

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.