ArticleScientific reports2022
Development and validation of SSR markers related to flower color based on full-length transcriptome sequencing in Chrysanthemum.
Article in Scientific reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.
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8 citing papers in PubMed.
- Genome-Wide Development and Characterization of 169 gSSR Markers in the Invasive PlantPlants (Basel, Switzerland) · 2025Article
- Genetic diversity and structure of the endemic Tanacetum cinerariifolium as a consequence of multiple processes operating at different temporal scales.Scientific reports · 2025Article
- Article
- Integrating flavonoid metabolome and RNA-seq data unveil flower color variation in Bombax ceiba.Scientific data · 2025Article
- Development of a diagnostic variable number tandem repeat marker and dual TaqMan genotyping assay to distinguish Lophophora species.International journal of legal medicine · 2025Article
- Development of SSR markers related to salinity resistance based on transcriptomic sequences in Medicago sativa.PloS one · 2025Article
- Genome-wide development of simple sequence repeats markers and genetic diversity analysis of chayote.BMC plant biology · 2024Article
- Phenotypic Variation in Flower Color and Morphology in the Gerbera (International journal of molecular sciences · 2023Article
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7 authors.
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Abstract
Chrysanthemum (Chrysanthemum moriforlium Ramat.) is one of the most popular flowers worldwide, with very high ornamental and economic values. However, the limitations of available DNA molecular markers and the lack of full genomic sequences hinder the study of genetic diversity and the molecular breeding of chrysanthemum. Here, we developed simple sequence repeat (SSR) from the full-length transcriptome sequences of chrysanthemum cultivar 'Hechengxinghuo'. A total of 11,699 SSRs with mono-, di-, tri-, tetra-, penta- and hexanucleotide repeats were identified, of which eight out of eighteen SSR loci identified based on sixteen transcripts participated in carotenoid metabolism or anthocyanin synthesis were validated as polymorphic SSR markers. These SSRs were used to classify 117 chrysanthemum accessions with different flower colors at the DNA and cDNA levels. The results showed that four SSR markers of carotenoid metabolic pathway divided 117 chrysanthemum accessions into five groups at cDNA level and all purple chrysanthemum accessions were in the group III. Furthermore, the SSR marker CHS-3, LCYE-1 and 3MaT may be related to green color and the PSY-1b marker may be related to yellow color. Overall, our work may be provide a novel method for mining SSR markers associated with specific traits.
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