Evidence map›Paper›PMID 36566205›Full record

ArticleBMC medical genomics2022

Construction and function analysis of the LncRNA-miRNA-mRNA competing endogenous RNA network in autoimmune hepatitis.

Zhencheng Li, Ying Liu, Yiwen Hou, Zhurong Li, Chen Chen, Huiqin Hao, Yang Liu

Open access · goldAbstract read
In one paragraph

Article in BMC medical genomics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.2field-weighted citation impact, top 53% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 3 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Zhencheng LiCollege of Basic Medical Sciences, Shanxi University of Chinese Medicine, Jinzhong, 030619, People's Republic of China. 2606893566@qq.com.
Ying LiuCollege of Basic Medical Sciences, Shanxi University of Chinese Medicine, Jinzhong, 030619, People's Republic of China.
Yiwen HouCollege of Basic Medical Sciences, Shanxi University of Chinese Medicine, Jinzhong, 030619, People's Republic of China.
Zhurong LiCollege of Basic Medical Sciences, Shanxi University of Chinese Medicine, Jinzhong, 030619, People's Republic of China.
Chen ChenCollege of Basic Medical Sciences, Shanxi University of Chinese Medicine, Jinzhong, 030619, People's Republic of China.
Huiqin HaoCollege of Basic Medical Sciences, Shanxi University of Chinese Medicine, Jinzhong, 030619, People's Republic of China. hhq@sxtcm.edu.cn.
Yang LiuCollege of Basic Medical Sciences, Shanxi University of Chinese Medicine, Jinzhong, 030619, People's Republic of China. liuyang1980@sxtcm.edu.cn.
Shanxi University · CN

Funding

Basic applied study of Shanxi Province 201901D111333Innovative projects of Universities in Shanxi Province 2020L0423Science and Technology Innovation Program of Shanxi University of Chinese Medicine 2020PY-JC-07Special project of scientific and technological cooperation and exchange in Shanxi Province 202104041101013
6 · The paper itself

Abstract

aimsTo construct the lncRNA-miRNA-mRNA competing endogenous RNA (ceRNA) network based on our microarray chip data for providing new insights into the pathogenesis of autoimmune hepatitis.

methodsThe ceRNA pairs were obtained by calculating the co-expression relationships among the differentially expressed lncRNAs (DELs), differentially expressed microRNAs (DEMis), and differentially expressed mRNAs (DEMs) with Pearson correlation analysis and hypergeometric distribution. The data of the differentially expressed genes were obtained from our previous studies in the concanavalin A-induced AIH mouse model. The biological functions of the ceRNA network were revealed by carrying out the GO and KEGG enrichment analysis. The expression of some differentially expressed genes constructed in the ceRNA pair was validated, and the correlation to liver injury was analyzed.

resultsThe mRNAs constructed in the ceRNA network were most significantly annotated in the GO terms of "inflammatory response" and enriched in "Cytokine-cytokine receptor interaction" and "MAPK signaling pathway". The differences in the expression of Gm38975, mmu-miR-125a-3p, and Map3k13 between the model group and control group were significant, and the expression of these genes at a transcriptional level was positively or negatively correlated to the activity of ALT and AST as well as the amount of MDA and NO.

conclusionOur work is the first in its kind to predict and illustrate the comprehensive lncRNA-miRNA-mRNA ceRNA network associated with the etiopathogenesis of AIH. This study indicates to lay the foundation for revealing the potential roles of ceRNAs in the occurrence of AIH and provide novel treatment targets for this disease.

Indexed as

Hepatitis, AutoimmuneMicroRNAsRNA, Long NoncodingRNA, MessengerAnimalsGene Regulatory NetworksMiceOligonucleotide Array Sequence AnalysisMicroRNAsRNA, Long NoncodingRNA, MessengerAutoimmune hepatitisceRNAConcanavalin AGM38975lncRNAMAPKmicroarraymiR-125a-3pmiRNA

Identifiers

PMID36566205
PMCPMC9790135
OpenAlexW4312130618

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.