Evidence map›Paper›PMID 36565697›Full record

ArticleCell2023

Clonal replacement sustains long-lived germinal centers primed by respiratory viruses.

Renan V H de Carvalho, Jonatan Ersching, Alexandru Barbulescu, Alvaro Hobbs, Tiago B R Castro, Luka Mesin, Johanne T Jacobsen, Brooke K Phillips, Hans-Heinrich Hoffmann, Roham Parsa and 8 more

Open access · greenAbstract read
In one paragraph

Article in Cell, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed
5.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed, 70 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Clonal dynamics of germinal center refueling by secondary immunization.bioRxiv : the preprint server for biology · 2026
    Article
  8. Chronic infection perturbs the affinity hierarchy of antiviral B cells.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  9. Article
  10. Extrafollicular and other non-germinal center B cell responses.Journal of immunology (Baltimore, Md. : 1950) · 2026
    Review
  11. The multilayered identity of B cell memory.Cellular & molecular immunology · 2026
    Review
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Explore antibody repertoire in the era of AI.Acta biochimica et biophysica Sinica · 2025
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

18 authors at 5 institutions in 1 country.

Renan V H de CarvalhoLaboratory of Lymphocyte Dynamics, The Rockefeller University, New York, NY, USA.
Jonatan ErschingLaboratory of Lymphocyte Dynamics, The Rockefeller University, New York, NY, USA.
Alexandru BarbulescuLaboratory of Lymphocyte Dynamics, The Rockefeller University, New York, NY, USA; Weill Cornell/Rockefeller/Sloan Kettering Tri-Institutional MD-PhD Program, New York, NY, USA.
Alvaro HobbsLaboratory of Lymphocyte Dynamics, The Rockefeller University, New York, NY, USA.
Tiago B R CastroLaboratory of Lymphocyte Dynamics, The Rockefeller University, New York, NY, USA; Laboratory of Mucosal Immunology, The Rockefeller University, New York, NY, USA.
Luka MesinLaboratory of Lymphocyte Dynamics, The Rockefeller University, New York, NY, USA.
Johanne T JacobsenLaboratory of Lymphocyte Dynamics, The Rockefeller University, New York, NY, USA.
Brooke K PhillipsRutgers Robert Wood Johnson Medical School and Princeton University MD/PhD Program, Piscataway, NJ, USA.
Hans-Heinrich HoffmannLaboratory of Virology and Infectious Disease, The Rockefeller University, New York, NY, USA.
Roham ParsaLaboratory of Mucosal Immunology, The Rockefeller University, New York, NY, USA.
Maria Cecilia C CanessoLaboratory of Lymphocyte Dynamics, The Rockefeller University, New York, NY, USA; Laboratory of Mucosal Immunology, The Rockefeller University, New York, NY, USA.
Carla R NowosadLaboratory of Lymphocyte Dynamics, The Rockefeller University, New York, NY, USA; Laboratory of Mucosal Immunology, The Rockefeller University, New York, NY, USA.
Allan FengDepartment of Medicine, Division of Immunology and Rheumatology, Stanford University School of Medicine, Stanford, CA, USA; Institute for Immunity, Transplantation and Infection, Stanford University School of Medicine, Stanford, CA, USA.
Sarah R LeistDepartment of Epidemiology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA.
Ralph S BaricDepartment of Epidemiology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA; Department of Microbiology and Immunology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA.
Emily YangDepartment of Medicine, Division of Immunology and Rheumatology, Stanford University School of Medicine, Stanford, CA, USA; Institute for Immunity, Transplantation and Infection, Stanford University School of Medicine, Stanford, CA, USA.
P J UtzDepartment of Medicine, Division of Immunology and Rheumatology, Stanford University School of Medicine, Stanford, CA, USA; Institute for Immunity, Transplantation and Infection, Stanford University School of Medicine, Stanford, CA, USA.
Gabriel D VictoraLaboratory of Lymphocyte Dynamics, The Rockefeller University, New York, NY, USA. Electronic address: victora@rockefeller.edu.
Rockefeller University · USStanford Medicine · USUniversity of North Carolina at Chapel Hill · USCornell University · USRutgers, The State University of New Jersey · US

Funding

Weill Cornell/Rockefeller/Sloan-Kettering MST ProgramT32GM007739 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI HSU, KATHARINE C · 1985 to 2023
$51.1M
Computational models of naturally acquired immunity to falciparum malariaU01AI150741 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BUTTE, ATUL J, GREENHOUSE, BRYAN R · 2020 to 2024
$7.4M
Quantifying Cell-Cell Interactions in the Immune System by Trans-Synaptic LabelingDP1AI144248 · NIAID · ROCKEFELLER UNIVERSITY · PI VICTORA, GABRIEL D · 2018 to 2022
$5.9M
Dynamics of Antigen-Driven Selection in Germinal CentersR01AI119006 · NIAID · ROCKEFELLER UNIVERSITY · PI Gabriel D Victora · 2017 to 2026
$5.7M
Giant MagnetoResistive (GMR) Sensors for Measuring Influenza VaccineR01AI125197 · NIAID · STANFORD UNIVERSITY · PI UTZ, PAUL JOSEPH, WANG, SHAN X. · 2016 to 2021
$5.0M
B cell clonal selection in gut-associated germinal centersR01AI157137 · NIAID · ROCKEFELLER UNIVERSITY · PI Daniel S Mucida, Gabriel D Victora · 2020 to 2026
$4.8M
Molecular control of germinal center selection and affinity maturationR01AI139117 · NIAID · ROCKEFELLER UNIVERSITY · PI Gabriel D Victora · 2018 to 2026
$3.9M
Immunity and Infectious DiseaseT32AI070084 · NIAID · ROCKEFELLER UNIVERSITY · PI Michel C Nussenzweig · 2008 to 2026
$3.3M
Investigating the Effect of Antibody Mediated Feedback on B Cell Clonal SelectionF30AI157448 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI BARBULESCU, ALEXANDRU · 2021 to 2024
$209k
NIAID NIH HHS DP1 AI144248NIAID NIH HHS F30 AI157448NIAID NIH HHS R01 AI119006NIAID NIH HHS R01 AI125197NIAID NIH HHS R01 AI139117NIAID NIH HHS R01 AI157137NIAID NIH HHS T32 AI070084NIAID NIH HHS U01 AI150741NIGMS NIH HHS T32 GM007739Wellcome Trust
6 · The paper itself

Abstract

Germinal centers (GCs) form in secondary lymphoid organs in response to infection and immunization and are the source of affinity-matured B cells. The duration of GC reactions spans a wide range, and long-lasting GCs (LLGCs) are potentially a source of highly mutated B cells. We show that rather than consisting of continuously evolving B cell clones, LLGCs elicited by influenza virus or SARS-CoV-2 infection in mice are sustained by progressive replacement of founder clones by naive-derived invader B cells that do not detectably bind viral antigens. Rare founder clones that resist replacement for long periods are enriched in clones with heavily mutated immunoglobulins, including some with very high affinity for antigen, that can be recalled by boosting. Our findings reveal underappreciated aspects of the biology of LLGCs generated by respiratory virus infection and identify clonal replacement as a potential constraint on the development of highly mutated antibodies within these structures.

Indexed as

B-LymphocytesGerminal CenterRNA Virus InfectionsAnimalsClone CellsCOVID-19Influenza, HumanMiceSARS-CoV-2B cellsclonal dynamicsgerminal centersImmunologyinfluenzaSARS-CoV-2viruses

Identifiers

PMID36565697
PMCPMC9870066
OpenAlexW4312116471

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.