Evidence map›Paper›PMID 36564591›Full record

ArticleNature structural & molecular biology2023

Multiscale reorganization of the genome following DNA damage facilitates chromosome translocations via nuclear actin polymerization.

Jennifer Zagelbaum, Allana Schooley, Junfei Zhao, Benjamin R Schrank, Elsa Callen, Shan Zha, Max E Gottesman, André Nussenzweig, Raul Rabadan, Job Dekker and 1 more

Erratum issuedOpen access · hybridAbstract read
In one paragraph

Article in Nature structural & molecular biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
5.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 68 citations in OpenAlex.

  1. Review
  2. WAVE2 and REST/NRSF Regulate Clustered Gene Expression by Maintaining Heterochromatin Organization.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2026
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  12. Recent advances in nuclear actin research.Nucleus (Austin, Tex.) · 2025
    Review
  13. Article
  14. Review
  15. Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 1 country.

Jennifer ZagelbaumInstitute for Cancer Genetics, Columbia University Vagelos College of Physicians and Surgeons, New York, NY, USA.
Allana Schooley *Department of Systems Biology, University of Massachusetts Medical School, Worcester, MA, USA.
Junfei Zhao *Department of Systems Biology, Columbia University Vagelos College of Physicians and Surgeons, New York, NY, USA.
Benjamin R SchrankInstitute for Cancer Genetics, Columbia University Vagelos College of Physicians and Surgeons, New York, NY, USA.ORCID http://orcid.org/0000-0001-8138-4250
Elsa CallenLaboratory of Genome Integrity, National Institutes of Health, Bethesda, MD, USA.
Shan ZhaInstitute for Cancer Genetics, Columbia University Vagelos College of Physicians and Surgeons, New York, NY, USA.ORCID http://orcid.org/0000-0002-6568-1818
Max E GottesmanDepartment of Biochemistry and Biophysics, Columbia University Vagelos College of Physicians and Surgeons, New York, NY, USA.
André NussenzweigLaboratory of Genome Integrity, National Institutes of Health, Bethesda, MD, USA.
Raul RabadanDepartment of Systems Biology, Columbia University Vagelos College of Physicians and Surgeons, New York, NY, USA.ORCID http://orcid.org/0000-0001-7946-9255
Job DekkerDepartment of Systems Biology, University of Massachusetts Medical School, Worcester, MA, USA.ORCID http://orcid.org/0000-0001-5631-0698
Jean GautierInstitute for Cancer Genetics, Columbia University Vagelos College of Physicians and Surgeons, New York, NY, USA. jg130@cumc.columbia.edu.ORCID http://orcid.org/0000-0002-6348-6023
Columbia University · USCancer Genetics (United States) · USNational Institutes of Health · USHoward Hughes Medical Institute · USThe University of Texas MD Anderson Cancer Center · USUniversity of Massachusetts Chan Medical School · US

Funding

The Role of CTIP in Lymphocyte Development and LymphomagenesisP01CA174653 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI SYMINGTON, LORRAINE S · 2014 to 2024
$17.6M
Structural Annotation of the Human GenomeR01HG003143 · NHGRI · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI Job Dekker · 2003 to 2026
$15.4M
DNA Repair and Genomic Instability in Cancer Development and TherapyR35CA197606 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI GAUTIER, JEAN · 2015 to 2021
$5.7M
Homologous Recombination Repair Domains: Formation and Impact on Genome StabilityF30CA250166 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI ZAGELBAUM, JENNIFER ASHLEY · 2020 to 2022
$143k
Howard Hughes Medical InstituteNCI NIH HHS F30 CA250166NCI NIH HHS P01 CA174653NCI NIH HHS R35 CA197606NHGRI NIH HHS R01 HG003143
6 · The paper itself

Abstract

Nuclear actin-based movements have been shown to orchestrate clustering of DNA double-strand breaks (DSBs) into homology-directed repair domains. Here we describe multiscale three-dimensional genome reorganization following DNA damage and analyze the contribution of the nuclear WASP-ARP2/3-actin pathway toward chromatin topology alterations and pathologic repair. Hi-C analysis reveals genome-wide, DNA damage-induced chromatin compartment flips facilitated by ARP2/3 that enrich for open, A compartments. Damage promotes interactions between DSBs, which in turn facilitate aberrant, actin-dependent intra- and inter-chromosomal rearrangements. Our work establishes that clustering of resected DSBs into repair domains by nuclear actin assembly is coordinated with multiscale alterations in genome architecture that enable homology-directed repair while also increasing nonhomologous end-joining-dependent translocation frequency.

Indexed as

ActinsTranslocation, GeneticChromatinDNA DamageDNA End-Joining RepairDNA RepairHumansPolymerizationActinsChromatin

Identifiers

PMID36564591
PMCPMC10104780
OpenAlexW4313312684

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.