Evidence map›Paper›PMID 36563016›Full record

ArticleGenetics2023

Telomeres are shorter in wild Saccharomyces cerevisiae isolates than in domesticated ones.

Melania D'Angiolo, Jia-Xing Yue, Matteo De Chiara, Benjamin P Barré, Marie-Josèphe Giraud Panis, Eric Gilson, Gianni Liti

Abstract read
In one paragraph

Article in Genetics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Melania D'AngioloInstitute for Research on Cancer and Aging (IRCAN), Université Côte d'Azur, 28 Avenue de Valombrose, 06107 Nice, France.
Jia-Xing YueInstitute for Research on Cancer and Aging (IRCAN), Université Côte d'Azur, 28 Avenue de Valombrose, 06107 Nice, France.
Matteo De ChiaraInstitute for Research on Cancer and Aging (IRCAN), Université Côte d'Azur, 28 Avenue de Valombrose, 06107 Nice, France.
Benjamin P BarréInstitute for Research on Cancer and Aging (IRCAN), Université Côte d'Azur, 28 Avenue de Valombrose, 06107 Nice, France.
Marie-Josèphe Giraud PanisInstitute for Research on Cancer and Aging (IRCAN), Université Côte d'Azur, 28 Avenue de Valombrose, 06107 Nice, France.
Eric GilsonInstitute for Research on Cancer and Aging (IRCAN), Université Côte d'Azur, 28 Avenue de Valombrose, 06107 Nice, France.
Gianni LitiInstitute for Research on Cancer and Aging (IRCAN), Université Côte d'Azur, 28 Avenue de Valombrose, 06107 Nice, France.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Telomeres are ribonucleoproteins that cap chromosome-ends and their DNA length is controlled by counteracting elongation and shortening processes. The budding yeast Saccharomyces cerevisiae has been a leading model to study telomere DNA length control and dynamics. Its telomeric DNA is maintained at a length that slightly varies between laboratory strains, but little is known about its variation at the species level. The recent publication of the genomes of over 1,000 S. cerevisiae strains enabled us to explore telomere DNA length variation at an unprecedented scale. Here, we developed a bioinformatic pipeline (YeaISTY) to estimate telomere DNA length from whole-genome sequences and applied it to the sequenced S. cerevisiae collection. Our results revealed broad natural telomere DNA length variation among the isolates. Notably, telomere DNA length is shorter in those derived from wild rather than domesticated environments. Moreover, telomere DNA length variation is associated with mitochondrial metabolism, and this association is driven by wild strains. Overall, these findings reveal broad variation in budding yeast's telomere DNA length regulation, which might be shaped by its different ecological life-styles.

Indexed as

Saccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsBase SequenceTelomereTelomere-Binding ProteinsSaccharomyces cerevisiae ProteinsTelomere-Binding Proteinsdomesticationevolutionnatural variationpopulation genomicsS. cerevisiaetelomereyeast

Identifiers

PMID36563016
PMCPMC9991508

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.