Evidence map›Paper›PMID 36562953›Full record

ArticleProbiotics and antimicrobial proteins2023

Molecular Analysis and Sex-specific Response of the Hepcidin Gene in Yellow Perch (Perca Flavescens) Following Lipopolysaccharide Challenge.

Xing Lu, Yueh-Chiang Han, Brian S Shepherd, Ying Xiang, Dong-Fang Deng, Bryan T Vinyard

Abstract read
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In one paragraph

Article in Probiotics and antimicrobial proteins, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 48% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 5 institutions in 2 countries.

Xing LuSchool of Freshwater Sciences, University of Wisconsin-Milwaukee, Milwaukee, WI, 53204, USA.
Yueh-Chiang HanOak Ridge Institute for Science and Education-Oak Ridge Associated Universities-US Department of Agriculture-Agricultural Research Service-School of Freshwater Sciences, University of Wisconsin-Milwaukee, Milwaukee, WI, 53204, USA. john.han@usda.gov.ORCID 0000-0002-5539-8699
Brian S ShepherdUS Department of Agriculture-Agricultural Research Service-School of Freshwater Sciences, University of Wisconsin-Milwaukee, Milwaukee, WI, 53204, USA.
Ying XiangSchool of Freshwater Sciences, University of Wisconsin-Milwaukee, Milwaukee, WI, 53204, USA.
Dong-Fang DengSchool of Freshwater Sciences, University of Wisconsin-Milwaukee, Milwaukee, WI, 53204, USA.
Bryan T VinyardUS Department of Agriculture-Agricultural Research Service/Northeast Area Statistics Group, Beltsville, MD, USA.
University of Wisconsin–Milwaukee · USAgricultural Research Service · USAgricultural Research Service - Northeast Area · USOak Ridge Associated Universities · USWuhan University · CN

Funding

Agricultural Research Service 019585FAgricultural Research Service 5090-31320-004-00DAgricultural Research Service 5090-31320-0054-00DAgricultural Research Service 8001-8888-002-00DChina Scholarship Council 201803260002
6 · The paper itself

Abstract

Hepcidin antimicrobial peptide (hamp) is active in teleosts against invading pathogens and plays important roles in the stress and immune responses of finfish. The response of hamp gene was studied in yellow perch (yp) (Perca flavescens) challenged with lipopolysaccharides to understand if this immunity response is sex-specifically different. The cloned hamp gene consists of an open-reading frame of 273 bp and encodes a deduced protein of 90 amino acids (a.a.), which includes a signal peptide of 24 a.a., a pro-domain of 40 a.a. and a mature peptide of 26 a.a. Yp hamp involves 8 cysteine residues with 4 disulfide bonds, and a protein with an internal alpha helix flanked with C- and N-terminal random coils was modeling predicted. RT-qPCR was used to analyze the relative abundances (RAs) of hamp mRNA in the livers of juvenile female and male yellow perch challenged with lipopolysaccharide. The expression levels of hamp were significantly elevated by 3 h (RA = 7.3) and then peaked by 6 h (RA = 29.4) post-treatment in females but the peak was delayed to 12 h (RA = 65.4) post-treatment in males. The peak mRNA level of challenged males was shown 7.6-fold higher than females. The post-treatment responses in both genders decreased to their lowest levels by 24 h and 48 h. Overall, female perch had an earlier but less-sensitive response to the lipopolysaccharide challenge than male.

Indexed as

PerchesAnimalsFemaleFish ProteinsHepcidinsLipopolysaccharidesMaleRNA, MessengerFish ProteinsHepcidinsLipopolysaccharidesRNA, MessengerAntimicrobial peptideGender differenceHepcidinLipopolysaccharideYellow perch

Identifiers

PMID36562953
OpenAlexW4312105906

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.