Evidence map›Paper›PMID 36562500›Full record

ArticleJournal of magnetic resonance imaging : JMRI2023

Deep-Learning-Based Contrast Synthesis From MRF Parameter Maps in the Knee Joint.

Olli Nykänen, Mika Nevalainen, Victor Casula, Antti Isosalo, Satu I Inkinen, Marko Nikki, Riccardo Lattanzi, Martijn A Cloos, Mikko J Nissi, Miika T Nieminen

Abstract read
In one paragraph

Article in Journal of magnetic resonance imaging : JMRI, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

Olli NykänenDepartment of Applied Physics, Faculty of Science and Forestry, University of Eastern Finland, Kuopio, Finland.ORCID 0000-0001-7329-3463
Mika NevalainenResearch Unit of Medical Imaging, Physics and Technology, Faculty of Medicine, University of Oulu, Oulu, Finland.
Victor CasulaResearch Unit of Medical Imaging, Physics and Technology, Faculty of Medicine, University of Oulu, Oulu, Finland.
Antti IsosaloResearch Unit of Medical Imaging, Physics and Technology, Faculty of Medicine, University of Oulu, Oulu, Finland.
Satu I InkinenResearch Unit of Medical Imaging, Physics and Technology, Faculty of Medicine, University of Oulu, Oulu, Finland.ORCID 0000-0002-9774-8925
Marko NikkiDepartment of Diagnostic Radiology, Oulu University Hospital, Oulu, Finland.
Riccardo LattanziCenter for Advanced Imaging Innovation and Research (CAI2R) and Bernard and Irene Schwartz Center for Biomedical Imaging, Department of Radiology, New York University Grossman School of Medicine, New York, New York, USA.
Martijn A CloosCentre for Advanced Imaging, University of Queensland, Brisbane, Australia.ORCID 0000-0002-0636-234X
Mikko J NissiDepartment of Applied Physics, Faculty of Science and Forestry, University of Eastern Finland, Kuopio, Finland.ORCID 0000-0002-5678-0689
Miika T NieminenResearch Unit of Medical Imaging, Physics and Technology, Faculty of Medicine, University of Oulu, Oulu, Finland.ORCID 0000-0002-2300-2848

Funding

TR&D 4: Revealing Microstructure: Biophysical modeling and validation for discovery and clinical careP41EB017183 · NIBIB · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI Hersh Chandarana · 2014 to 2026
$19.3M
Hip Chondromics: Comprehensive Cartilage Characterization with MR FingerprintingR01AR070297 · NIAMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI LATTANZI, RICCARDO · 2016 to 2021
$2.8M
NIAMS NIH HHS R01 AR070297NIBIB NIH HHS P41 EB017183
6 · The paper itself

Abstract

backgroundMagnetic resonance fingerprinting (MRF) is a method to speed up acquisition of quantitative MRI data. However, MRF does not usually produce contrast-weighted images that are required by radiologists, limiting reachable total scan time improvement. Contrast synthesis from MRF could significantly decrease the imaging time. PURPOSE: To improve clinical utility of MRF by synthesizing contrast-weighted MR images from the quantitative data provided by MRF, using U-nets that were trained for the synthesis task utilizing L1- and perceptual loss functions, and their combinations. STUDY TYPE: Retrospective. POPULATION: Knee joint MRI data from 184 subjects from Northern Finland 1986 Birth Cohort (ages 33-35, gender distribution not available). FIELD STRENGTH AND SEQUENCE: A 3 T, multislice-MRF, proton density (PD)-weighted 3D-SPACE (sampling perfection with application optimized contrasts using different flip angle evolution), fat-saturated T2-weighted 3D-space, water-excited double echo steady state (DESS). ASSESSMENT: Data were divided into training, validation, test, and radiologist's assessment sets in the following way: 136 subjects to training, 3 for validation, 3 for testing, and 42 for radiologist's assessment. The synthetic and target images were evaluated using 5-point Likert scale by two musculoskeletal radiologists blinded and with quantitative error metrics. STATISTICAL TESTS: Friedman's test accompanied with post hoc Wilcoxon signed-rank test and intraclass correlation coefficient. The statistical cutoff P <0.05 adjusted by Bonferroni correction as necessary was utilized.

resultsThe networks trained in the study could synthesize conventional images with high image quality (Likert scores 3-4 on a 5-point scale). Qualitatively, the best synthetic images were produced with combination of L1- and perceptual loss functions and perceptual loss alone, while L1-loss alone led to significantly poorer image quality (Likert scores below 3). The interreader and intrareader agreement were high (0.80 and 0.92, respectively) and significant. However, quantitative image quality metrics indicated best performance for the pure L1-loss. DATA

conclusionSynthesizing high-quality contrast-weighted images from MRF data using deep learning is feasible. However, more studies are needed to validate the diagnostic accuracy of these synthetic images. EVIDENCE LEVEL: 4. TECHNICAL EFFICACY: Stage 1.

Indexed as

Deep LearningHumansImage Processing, Computer-AssistedImaging, Three-DimensionalKnee JointMagnetic Resonance ImagingMagnetic Resonance SpectroscopyRetrospective StudiesDeep LearningKnee JointMagnetic Resonance FingerprintingSynthetic MRI

Identifiers

PMID36562500
PMCPMC10287835

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.