Evidence map›Paper›PMID 36561444›Full record

ArticleFrontiers in plant science2022

A non-destructive coconut fruit and seed traits extraction method based on Micro-CT and deeplabV3+ model.

Lejun Yu, Lingbo Liu, Wanneng Yang, Dan Wu, Jinhu Wang, Qiang He, ZhouShuai Chen, Qian Liu

Abstract read
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Article in Frontiers in plant science, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

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8citing papers in PubMed
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1 · What the graph read from it

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3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

8 authors.

Lejun YuSchool of Biomedical Engineering, Hainan University, Haikou, China.
Lingbo LiuWuhan National Laboratory for Optoelectronics, Britton Chance Center for Biomedical Photonics, Key Laboratory of Ministry of Education for Biomedical Photonics, Department of Biomedical Engineering, Huazhong University of Science and Technology, Wuhan, China.
Wanneng YangNational Key Laboratory of Crop Genetic Improvement, National Center of Plant Gene Research, Huazhong Agricultural University, Wuhan, China.
Dan WuWuhan National Laboratory for Optoelectronics, Britton Chance Center for Biomedical Photonics, Key Laboratory of Ministry of Education for Biomedical Photonics, Department of Biomedical Engineering, Huazhong University of Science and Technology, Wuhan, China.
Jinhu WangSchool of Biomedical Engineering, Hainan University, Haikou, China.
Qiang HeSchool of Biomedical Engineering, Hainan University, Haikou, China.
ZhouShuai ChenSchool of Biomedical Engineering, Hainan University, Haikou, China.
Qian LiuSchool of Biomedical Engineering, Hainan University, Haikou, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

With the completion of the coconut gene map and the gradual improvement of related molecular biology tools, molecular marker-assisted breeding of coconut has become the next focus of coconut breeding, and accurate coconut phenotypic traits measurement will provide technical support for screening and identifying the correspondence between genotype and phenotype. A Micro-CT system was developed to measure coconut fruits and seeds automatically and nondestructively to acquire the 3D model and phenotyping traits. A deeplabv3+ model with an Xception backbone was used to segment the sectional image of coconut fruits and seeds automatically. Compared with the structural-light system measurement, the mean absolute percentage error of the fruit volume and surface area measurements by the Micro-CT system was 1.87% and 2.24%, respectively, and the squares of the correlation coefficients were 0.977 and 0.964, respectively. In addition, compared with the manual measurements, the mean absolute percentage error of the automatic copra weight and total biomass measurements was 8.85% and 25.19%, respectively, and the adjusted squares of the correlation coefficients were 0.922 and 0.721, respectively. The Micro-CT system can nondestructively obtain up to 21 agronomic traits and 57 digital traits precisely.

Indexed as

coconut phenotypic traitsdeep learningMicro-CTnon-destructiveplant phenomics

Identifiers

PMID36561444
PMCPMC9763456

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.