Evidence map›Paper›PMID 36560786›Full record

ArticleViruses2022

The Secret Life of the Inhibitor of Virus Replication.

Peter Palukaitis, Masoud Akbarimotlagh, Eseul Baek, Ju-Yeon Yoon

Abstract read
In one paragraph

Article in Viruses, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Peter PalukaitisDepartment of Horticulture Sciences, Seoul Women's University, Seoul 01797, Republic of Korea.
Masoud AkbarimotlaghPlant Pathology Department, Faculty of Agriculture, Tarbiat Modares University, Tehran 14115-111, Iran.
Eseul BaekDepartment of Horticulture Sciences, Seoul Women's University, Seoul 01797, Republic of Korea.
Ju-Yeon YoonDepartment of Plant Protection and Quarantine, Jeonbuk National University, Jeonju 54896, Republic of Korea.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The inhibitor of virus replication (IVR) is an inducible protein that is not virus-target-specific and can be induced by several viruses. The GenBank was interrogated for sequences closely related to the tobacco IVR. Various RNA fragments from tobacco, tomato, and potato and their genomic DNA contained IVR-like sequences. However, IVRs were part of larger proteins encoded by these genomic DNA sequences, which were identified in Arabidopsis as being related to the cyclosome protein designated anaphase-promoting complex 7 (APC7). Sequence analysis of the putative APC7s of nine plant species showed proteins of 558-561 amino acids highly conserved in sequence containing at least six protein-binding elements of 34 amino acids called tetratricopeptide repeats (TPRs), which form helix-turn-helix structures. The structures of Arabidopsis APC7 and the tobacco IVR proteins were modeled using the AlphaFold program and superimposed, showing that IVR had the same structure as the C-terminal 34% of APC7, indicating that IVR was a product of the

Indexed as

ArabidopsisArabidopsis ProteinsAmino AcidsAnaphase-Promoting Complex-CyclosomeApc7 Subunit, Anaphase-Promoting Complex-CyclosomeN-AcetylglucosaminyltransferasesTranscription FactorsVirus ReplicationAmino AcidsAnaphase-Promoting Complex-CyclosomeApc7 Subunit, Anaphase-Promoting Complex-CyclosomeArabidopsis ProteinsN-AcetylglucosaminyltransferasesSECRET AGENT protein, ArabidopsisTranscription Factorsanaphase-promoting complex 7Arabidopsiscyclosomedefense response factorsinhibitor of virus replicationprotein structuressolanaceoustobacco

Identifiers

PMID36560786
PMCPMC9787567

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.