Evidence map›Paper›PMID 36560724›Full record

ArticleViruses2022

Re-Introduction of West Nile Virus Lineage 1 in Senegal from Europe and Subsequent Circulation in Human and Mosquito Populations between 2012 and 2021.

Marie Henriette Dior Ndione, El Hadji Ndiaye, Martin Faye, Moussa Moïse Diagne, Diawo Diallo, Amadou Diallo, Amadou Alpha Sall, Cheikh Loucoubar, Oumar Faye, Mawlouth Diallo and 3 more

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 2 pooled it
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 2 syntheses or guidelines pooled it, 25 citations in OpenAlex.

  1. Pooled it
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  15. Autochthonous dengue outbreak in Marche Region, Central Italy, August to October 2024.Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin · 2024
    Article
  16. Article
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  18. Genomic epidemiology of West Nile virus in Europe.One health (Amsterdam, Netherlands) · 2024
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 1 institution in 1 country.

Marie Henriette Dior NdioneVirology Department, Institut Pasteur de Dakar, Dakar 220, Senegal.ORCID 0000-0002-5613-4521
El Hadji NdiayeZoology Medical Department, Institut Pasteur de Dakar, Dakar 220, Senegal.ORCID 0000-0002-5007-0723
Martin FayeVirology Department, Institut Pasteur de Dakar, Dakar 220, Senegal.ORCID 0000-0003-3207-6344
Moussa Moïse DiagneVirology Department, Institut Pasteur de Dakar, Dakar 220, Senegal.ORCID 0000-0001-5461-5623
Diawo DialloZoology Medical Department, Institut Pasteur de Dakar, Dakar 220, Senegal.ORCID 0000-0002-7478-5248
Amadou DialloEpidemiology, Clinical Research and Data Science Department, Institut Pasteur de Dakar, Dakar 220, Senegal.ORCID 0000-0002-8584-9972
Amadou Alpha SallVirology Department, Institut Pasteur de Dakar, Dakar 220, Senegal.
Cheikh LoucoubarEpidemiology, Clinical Research and Data Science Department, Institut Pasteur de Dakar, Dakar 220, Senegal.ORCID 0000-0002-9582-4197
Oumar FayeVirology Department, Institut Pasteur de Dakar, Dakar 220, Senegal.ORCID 0000-0002-3478-1322
Mawlouth DialloZoology Medical Department, Institut Pasteur de Dakar, Dakar 220, Senegal.
Ousmane FayeVirology Department, Institut Pasteur de Dakar, Dakar 220, Senegal.
Mamadou Aliou BarryEpidemiology, Clinical Research and Data Science Department, Institut Pasteur de Dakar, Dakar 220, Senegal.
Gamou FallVirology Department, Institut Pasteur de Dakar, Dakar 220, Senegal.ORCID 0000-0001-5035-1325
Institut Pasteur de Dakar · SN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

West Nile virus (WNV) is a virus of the Japanese encephalitis antigenic complex and belongs to the family Flaviviridae of the genus flavivirus. The virus can cause infection in humans which in most cases is asymptomatic, however symptomatic cases exist and the disease can be severe causing encephalitis and meningoencephalitis. The virus is maintained in an enzootic cycle involving mosquitoes and birds, humans and other mammals such as horses can be accidental hosts. A mosquito-based arbovirus surveillance system and the sentinel syndromic surveillance network (4S) have been in place since 1988 and 2015 respectively, to better understand the transmission dynamics of arboviruses including WNV in Senegal. Arthropod and human samples have been collected from the field and analysed at Institut Pasteur de Dakar using different methods including RT-PCR, ELISA, plaque reduction neutralization test and viral isolation. RT-PCR positive samples have been analysed by Next Generation Sequencing. From 2012 to 2021, 7912 samples have been analysed and WNV positive cases have been detected, 20 human cases (19 IgM and 1 RT-PCR positive cases) and 41 mosquito pools. Phylogenetic analyzes of the sequences of complete genomes obtained showed the circulation of lineage 1a, with all these recent strains from Senegal identical to each other and very close to strains isolated from horse in France in 2015, Italy and Spain. Our data showed lineage 1a endemicity in Senegal as previously described, with circulation of WNV in humans and mosquitoes. Phylogenetic analyzes carried out with the genome sequences obtained also revealed exchanges of WNV strains between Europe and Senegal which could be possible via migratory birds. The surveillance systems that have enabled the detection of WNV in humans and arthropods should be extended to animals in a one-health approach to better prepare for global health threats.

Indexed as

ArbovirusesCulicidaeWest Nile FeverWest Nile virusAnimalsBirdsEuropeHorsesHumansMammalsPhylogenySenegal4S networkarbovirushuman populationlineage 1mosquito-based surveillancemosquito populationphylogenetic analysisSenegalWest Nile virus

Identifiers

PMID36560724
PMCPMC9785585
OpenAlexW4311633532

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.