Evidence map›Paper›PMID 36560625›Full record

ArticleViruses2022

Genetic Characterization of African Swine Fever Virus from Pig Farms in South Korea during Outbreaks in 2019-2021.

Ki-Hyun Cho, Da-Young Kim, Min-Kyung Jang, Seong-Keun Hong, Ji-Hyoung Ryu, Hae-Eun Kang, Jee-Yong Park

Abstract read
In one paragraph

Article in Viruses, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Ki-Hyun ChoForeign Animal Disease Division, Animal and Plant Quarantine Agency, Gimcheon-si 39660, Republic of Korea.ORCID 0000-0001-8021-8402
Da-Young KimForeign Animal Disease Division, Animal and Plant Quarantine Agency, Gimcheon-si 39660, Republic of Korea.ORCID 0000-0001-8053-5010
Min-Kyung JangForeign Animal Disease Division, Animal and Plant Quarantine Agency, Gimcheon-si 39660, Republic of Korea.
Seong-Keun HongForeign Animal Disease Division, Animal and Plant Quarantine Agency, Gimcheon-si 39660, Republic of Korea.
Ji-Hyoung RyuForeign Animal Disease Division, Animal and Plant Quarantine Agency, Gimcheon-si 39660, Republic of Korea.
Hae-Eun KangForeign Animal Disease Division, Animal and Plant Quarantine Agency, Gimcheon-si 39660, Republic of Korea.ORCID 0000-0002-6013-484X
Jee-Yong ParkForeign Animal Disease Division, Animal and Plant Quarantine Agency, Gimcheon-si 39660, Republic of Korea.ORCID 0000-0002-7172-1732

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In South Korea, a total of 21 African swine fever (ASF) infected farms were confirmed during 2019-2021. ASF viruses (ASFVs) were isolated from the blood and spleen samples of the 21 affected farms and their genetic characteristics were analyzed. Phylogenetic analysis indicated that the 21 Korean ASFV strains belonged to p72 genotype II and serogroup 8. All isolates were of the intergenic region (IGR) II variant with 10 tandem repeat sequences between I73R and I329L and the central variable region (CVR) 1 variant of the B602L gene. There were no IGR variations between the A179L and A137R and between the MGF 505 9R and10R nor mutations in the O174L, K145R, MGF 505-5R, CP204L, and Bt/Sj regions. The genes of the 21 ASFV strains were identical to those of Georgia 2007/1 and Chinese and Vietnamese strains (Pig/HLJ/2018, China/2018/AnhuiXCGQ, and ASFV_NgheAn_2019); however, X69R of the J268L region of the 18th isolate (Korea/Pig/Goseong/2021) had three nucleotide (CTA) insertions at the 209th position, which led to the addition of one tyrosine (Y) at the C-terminal. This suggests that there are variations among ASFVs circulating in South Korea and the 18th ASFV-infected farm was due to a variant different from those of the other 20 pig farms.

Indexed as

African Swine FeverAfrican Swine Fever VirusAnimalsDisease OutbreaksFarmsGenotypePhylogenyRepublic of KoreaSus scrofaSwineAfrican swine fever virusgenetic characterizationpig farmsSouth Koreavirus isolation

Identifiers

PMID36560625
PMCPMC9784228

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.