Evidence map›Paper›PMID 36560610›Full record

ArticleViruses2022

Host-Dependent Modifications of Packaged Alphavirus Genomic RNA Influence Virus Replication in Mammalian Cells.

John M Crawford, Liewei L Yan, Hani Zaher, Richard W Hardy

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 44% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. Review
  2. Article
  3. Current perspectives on alphavirus encapsidation, assembly and budding.Frontiers in cellular and infection microbiology · 2025
    Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

John M CrawfordDepartment of Biology, Indiana University, Bloomington, IN 47405, USA.
Liewei L YanDepartment of Biology, Washington University, St. Louis, MO 63130, USA.
Hani ZaherDepartment of Biology, Washington University, St. Louis, MO 63130, USA.
Richard W HardyDepartment of Biology, Indiana University, Bloomington, IN 47405, USA.
Indiana University Bloomington · USWashington University in St. Louis · US

Funding

THE ROLE OF THE RIBOSOME IN DETERMINING THE FATE OF DAMAGED MRNA-SupplementR01GM112641 · NIGMS · WASHINGTON UNIVERSITY · PI ZAHER, HANI · 2015 to 2024
$3.1M
Reading frame maintenance by the ribosome during stallingR01GM141474 · NIGMS · WASHINGTON UNIVERSITY · PI ZAHER, HANI · 2021 to 2024
$1.3M
Epitranscriptomic Regulation of Alphavirus Replication and TransmissionR21AI153785 · NIAID · TRUSTEES OF INDIANA UNIVERSITY · PI HARDY, RICHARD W · 2020 to 2021
$422k
NIAID NIH HHS R21 AI153785NIGMS NIH HHS R01 GM112641NIGMS NIH HHS R01 GM141474NIH HHS R01GM112641NIH HHS R21AI153785
6 · The paper itself

Abstract

Alphaviruses must interact efficiently with two distinct host environments in order to replicate and transmit between vertebrate and mosquito hosts. Some host-origin-dependent differences in virus particle composition that appear to facilitate the transmission cycle are known. However, the impact of host-mediated modification of packaged viral genomic RNA on subsequent infection has not been previously investigated. Here we show that in human (HEK-293) cells, mosquito-derived Sindbis virus (SINV) replicates and spreads faster, producing a more infectious virus than its mammalian-derived counterpart. This enhanced replication is neither a result of differences in the stability nor the production of the infecting genomic RNA. Nevertheless, purified genomic RNA from mosquito-derived SINV established infection in HEK-293 cells more efficiently than that of mammalian-derived SINV, indicating that the genomic RNA itself is different between the two producing hosts and this difference is a determinant of infection. In agreement with this idea, we show that mosquito-derived SINV genomic RNA is a more active template for translation than mammalian-derived SINV genomic RNA, and we attribute this difference to host-dependent changes in modification of packaged genomic RNA as determined by LC/MS-MS. Our data support the hypothesis that among other factors, the host-dependent modification profile of the packaged vRNA is likely to play an important role in the efficiency of SINV infection and replication in mammalian cells.

Indexed as

AlphavirusAlphavirus InfectionsCulicidaeAnimalsGenomicsHEK293 CellsHumansMammalsRNA, ViralSindbis VirusVirus ReplicationRNA, Viralhost dependenceRNA modificationsvirus infectivity

Identifiers

PMID36560610
PMCPMC9781491
OpenAlexW4309723498

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.